Miyakogusa Predicted Gene

Lj4g3v2263870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2263870.1 tr|Q9FZ23|Q9FZ23_ARATH T6A9.7 protein
OS=Arabidopsis thaliana GN=T6A9.7 PE=4 SV=1,37.84,5e-19,seg,NULL;
coiled-coil,NULL,CUFF.50614.1
         (236 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g122710.1 | transmembrane protein, putative | HC | chr4:50...   144   6e-35
Medtr2g033650.1 | transmembrane protein, putative | HC | chr2:12...   131   5e-31
Medtr2g033650.2 | transmembrane protein, putative | HC | chr2:12...   131   5e-31

>Medtr4g122710.1 | transmembrane protein, putative | HC |
           chr4:50611308-50612706 | 20130731
          Length = 241

 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/252 (47%), Positives = 138/252 (54%), Gaps = 27/252 (10%)

Query: 1   MEDTSVKEVGVEVDLESGLVVVTKDDSKNVSTPGNTKQGKTLFDKFSCGLVVGDSRKGEV 60
           M+D ++K  G EVD+ESGLVV TKDDS      GNTKQ +TLF K  CG +VGDS K E 
Sbjct: 1   MDDRNMKGEGGEVDIESGLVV-TKDDS------GNTKQERTLFAKIYCG-IVGDSIKVEE 52

Query: 61  RHSV-YLNKSNLGSVCIDIVK------------VSKENTLVKEXXXXXXXXXXXXXXXXX 107
           R+SV YL  SNL    +++VK             S EN+ VKE                 
Sbjct: 53  RNSVLYLKDSNLSGDSVNMVKETNKLLTGQDLVKSVENSPVKEKRKKSSNKKAAKPPRAP 112

Query: 108 XXXXLDAADQKLIREITELAMLKRARIERXXXXXXXXXXXXXXXXXXXXXXXIFTVVFCI 167
               LDAADQKLIREIT+LAMLKRAR+ER                       + TVVFCI
Sbjct: 113 RGPSLDAADQKLIREITQLAMLKRARVERMKALKKMKAAKASSSPSSSMFAMVCTVVFCI 172

Query: 168 VILLQGM-SPGKSSVKSFQEYPVSAGGEEGGLILA--RHQFYPSSNDPNAPGLESQKIVQ 224
           VIL QG+ S GKSSV SFQ  PVSAGG EG LI    +HQ    S   +AP  ES KIV+
Sbjct: 173 VILFQGISSSGKSSVTSFQGSPVSAGGAEGDLIAVQLQHQLNQISIQQHAPSSESHKIVR 232

Query: 225 QVTGSDSSVKLR 236
              GS  S KLR
Sbjct: 233 ---GSYLSRKLR 241


>Medtr2g033650.1 | transmembrane protein, putative | HC |
           chr2:12806283-12802975 | 20130731
          Length = 224

 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 124/239 (51%), Gaps = 20/239 (8%)

Query: 1   MEDTSVKEVGVEVDLESGLVVVTKDDSKNVSTPGNTKQGKTLFDKFSCGLVVGDSRKGEV 60
           M+  S +E  +EVDLESGL ++ +D+S+ +S                 G  VG S  GE 
Sbjct: 1   MDQRSGREKDIEVDLESGLPLI-EDNSRRIS--------------IISGGFVGGSVNGEA 45

Query: 61  RHSVYLNKSNLGSVCIDIVKVSKENTLVKEXXXXXXXXXXXXXXXXXXXXXLDAADQKLI 120
           R S YLN+SNL  V ++++KV  +    KE                     LDAAD KLI
Sbjct: 46  RPSSYLNESNLSEVSVNMMKVVNK-APAKEKRKKASGKKAAKPPRPPQGPSLDAADHKLI 104

Query: 121 REITELAMLKRARIERXXXXXXXXXXXXXXXXXXXXX--XXIFTVVFCIVILLQGMSPGK 178
           +E++ELAMLKRARIER                         +FTV+F IVI+ QGMS   
Sbjct: 105 KEMSELAMLKRARIERMKALKKMRTAKSSTPSSNSSSIVAMVFTVIFFIVIICQGMSSTG 164

Query: 179 SSVKS-FQEYPVSAGGEEGGLILARHQFYPSSNDPNAPGLESQKIVQQVTGSDSSVKLR 236
            S  S FQ  PVSAGG E GLI  ++Q  PSS D NAPG ES   VQ+V+GSD   KLR
Sbjct: 165 KSSVSSFQGSPVSAGGTEEGLISVQYQLNPSS-DSNAPGSESINFVQRVSGSDLHEKLR 222


>Medtr2g033650.2 | transmembrane protein, putative | HC |
           chr2:12805524-12802975 | 20130731
          Length = 224

 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 124/239 (51%), Gaps = 20/239 (8%)

Query: 1   MEDTSVKEVGVEVDLESGLVVVTKDDSKNVSTPGNTKQGKTLFDKFSCGLVVGDSRKGEV 60
           M+  S +E  +EVDLESGL ++ +D+S+ +S                 G  VG S  GE 
Sbjct: 1   MDQRSGREKDIEVDLESGLPLI-EDNSRRIS--------------IISGGFVGGSVNGEA 45

Query: 61  RHSVYLNKSNLGSVCIDIVKVSKENTLVKEXXXXXXXXXXXXXXXXXXXXXLDAADQKLI 120
           R S YLN+SNL  V ++++KV  +    KE                     LDAAD KLI
Sbjct: 46  RPSSYLNESNLSEVSVNMMKVVNK-APAKEKRKKASGKKAAKPPRPPQGPSLDAADHKLI 104

Query: 121 REITELAMLKRARIERXXXXXXXXXXXXXXXXXXXXX--XXIFTVVFCIVILLQGMSPGK 178
           +E++ELAMLKRARIER                         +FTV+F IVI+ QGMS   
Sbjct: 105 KEMSELAMLKRARIERMKALKKMRTAKSSTPSSNSSSIVAMVFTVIFFIVIICQGMSSTG 164

Query: 179 SSVKS-FQEYPVSAGGEEGGLILARHQFYPSSNDPNAPGLESQKIVQQVTGSDSSVKLR 236
            S  S FQ  PVSAGG E GLI  ++Q  PSS D NAPG ES   VQ+V+GSD   KLR
Sbjct: 165 KSSVSSFQGSPVSAGGTEEGLISVQYQLNPSS-DSNAPGSESINFVQRVSGSDLHEKLR 222