Miyakogusa Predicted Gene

Lj4g3v2250350.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2250350.2 Non Characterized Hit- tr|D8S568|D8S568_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43.12,1e-17,seg,NULL; DNA (CYTOSINE-5-)-METHYLTRANSFERASE
3-RELATED,NULL,CUFF.50713.2
         (528 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123600.1 | DNA methyltransferase, putative | HC | chr4:50...   642   0.0  
Medtr3g011150.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC...   122   6e-28
Medtr5g019420.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC...   119   1e-26
Medtr5g019420.2 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC...   118   1e-26
Medtr0336s0070.1 | hypothetical protein | HC | scaffold0336:1778...   117   2e-26
Medtr6g005580.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC...   115   1e-25

>Medtr4g123600.1 | DNA methyltransferase, putative | HC |
           chr4:50895545-50887895 | 20130731
          Length = 723

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/537 (64%), Positives = 394/537 (73%), Gaps = 30/537 (5%)

Query: 1   MAGSSSGRGGKNGMDLTVXXXXXXXXXXXXXXXXXXPEPPYTTTFSRDVGDNVASSSGSK 60
           M G+S+GRGGKN +                         PYT   SRD  +  ASSSGSK
Sbjct: 1   MTGTSNGRGGKNPVFPKTEDFDYELS-------------PYTA-LSRDFRETAASSSGSK 46

Query: 61  LRSFFIGMGFLPSLVDKVIEENGEGNSDTLLEILLRSARKSNGDSSDFLEGSLNTSKGRR 120
           +R FFIGMGFLP LVDKVIEENGE NSD LLEILLR +  +NGDSSD LEGSLNT++  R
Sbjct: 47  VRGFFIGMGFLPGLVDKVIEENGEENSDALLEILLRCS--TNGDSSDSLEGSLNTNE-HR 103

Query: 121 SAPSVCPAGHSKEXXXXXXXXXXXXXXXXXXXXXXPEISMVNQPKEEVGELDDVIDDKRG 180
           S P+  P  HSKE                      PE+SM+NQPKEEV E+ + I+D RG
Sbjct: 104 SIPNFFPNAHSKEALQISNLESSDSLDSLFDDKDSPEVSMINQPKEEVDEIFEDIEDSRG 163

Query: 181 SLLRMNFSLEEVEFAINRLGDEASIPELVDFIFAAQIAKKMKRETD--DDVICYDSRNEV 238
           +LL MNFS EEVEFAI +LG++A +PELVDFIFAAQIAKKMK+E    DD+ CY    E+
Sbjct: 164 TLLMMNFSAEEVEFAIRKLGNKAPVPELVDFIFAAQIAKKMKKEEAEEDDIKCYVREKEI 223

Query: 239 SHEKLYGIMAKTLYLLEMGFSESEVSSAVDKLGPEAPISELANFIFAEQNGIDYVMEYKY 298
           S+E+L+GIMAKTL L EMGFSE+E+SSAVDKLGP+ PISELANFIFAEQNGI+YVMEYKY
Sbjct: 224 SNEQLFGIMAKTLQLFEMGFSENEISSAVDKLGPDVPISELANFIFAEQNGIEYVMEYKY 283

Query: 299 P------WIKEEQHSDMYDTAEVKPEDFSDEPSQSRQVNLEETYNGKRVKEEG-IDEIPN 351
           P      WIKEE+ SDMY TAEVK EDFS EPSQSRQVNL ET  G+RVKEE  IDE P+
Sbjct: 284 PSGPSYSWIKEEEQSDMYGTAEVKVEDFSHEPSQSRQVNLGETGTGERVKEEDYIDEFPD 343

Query: 352 AVSDMGYFDLAENDRGKRPKYEYXXXXXXXXXPYWVEEKVDSVVARMSQLNKSNPSRSLN 411
            V         ENDR KRPKYEY         PYWVEE VD+VVA MS+ NKS PSRSL+
Sbjct: 344 DVKP----GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMVDTVVATMSRRNKSTPSRSLS 399

Query: 412 SMAAKRPFFLYGNVANISYDSWVKLSQFLYGVEPEFVNNQLFSALNRIEGYIHNLPVENR 471
           S+AAK PFFL+GNV+NI+YDSW K+SQFLY +EPEFVN +LFSALNRIEGYIHNLP ENR
Sbjct: 400 SVAAKPPFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNTELFSALNRIEGYIHNLPTENR 459

Query: 472 FHILPKPPMTIEDVLPRTKKWWPPWDSRKQLSCINCETRGVAQLCDRLGKFLADSGG 528
           F ILPKPPMTIED +PRTKKWWPPWDSRK+L+C  CET G+ QLCDRLG+ LA+SGG
Sbjct: 460 FQILPKPPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETGGITQLCDRLGRALANSGG 516


>Medtr3g011150.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC |
           chr3:2719044-2714206 | 20130731
          Length = 590

 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 126/277 (45%), Gaps = 51/277 (18%)

Query: 251 LYLLEMGFSESEVSSAVDKLGPEAPISELANFIFAEQNGIDYVMEYKYPWIKEEQHSDMY 310
           L L+ MGF E E   A+++LG ++ + +L +FI   Q             +KEE      
Sbjct: 145 LSLVNMGFKEEEALMAIERLGLDSSLDDLVDFIGVAQ------------LVKEED----- 187

Query: 311 DTAEVKPED---FSDEPSQSRQVNLEETYNGKRVKEEGIDEIPNAVSDMGY-FDLAENDR 366
             + + PED    S  P   ++   E    GK+ ++      P    D G   +L     
Sbjct: 188 --SLLPPEDKQQCSGHPKPRKRSLYEYEVLGKKKRKVSDKRTPCEEEDDGQTLNLPNPMM 245

Query: 367 GKRPKYEYXXXXXXXXXPYWVEEKVDSVVARMSQLNKSNPSRSLNSMAAKRPFFLYGNVA 426
           G                 + V  +  S++            R+L   A   P+F Y NVA
Sbjct: 246 G-----------------FGVPNEPKSIITH----------RTLPENAIGPPYFYYENVA 278

Query: 427 NISYDSWVKLSQFLYGVEPEFVNNQLFSALNRIEGYIHNLPVENRFHILPKPPMTIEDVL 486
                 W K+S+FLY V+PE+V+++ F A  R  GY+HNLP+ NRF +LP PP TI D  
Sbjct: 279 ITPKGVWQKISRFLYDVQPEYVDSKYFCAAARKRGYVHNLPIANRFPLLPLPPRTILDAF 338

Query: 487 PRTKKWWPPWDSRKQLSCINCETRGVAQLCDRLGKFL 523
           P  ++WWP WD RK L+C+     G AQ  DR+ K L
Sbjct: 339 PPLRRWWPSWDPRKNLNCLQT-VHGSAQTTDRIRKKL 374


>Medtr5g019420.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC |
           chr5:7318299-7325230 | 20130731
          Length = 590

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 408 RSLNSMAAKRPFFLYGNVANISYDSWVKLSQFLYGVEPEFVNNQLFSALNRIEGYIHNLP 467
           R+L   A   P+F Y NVA      W  +S+FLY V+PE+V+++ F A  R  GY+HNLP
Sbjct: 260 RTLPENAIGPPYFYYENVALTPKGVWQTISRFLYDVQPEYVDSKYFCAAARKRGYVHNLP 319

Query: 468 VENRFHILPKPPMTIEDVLPRTKKWWPPWDSRKQLSCINCETRGVAQLCDRLGKFL 523
           + NRF +LP PP TI D  P  +KWWP WD RK L+C+     G AQ  DR+ K L
Sbjct: 320 IANRFPLLPLPPRTILDAFPLLRKWWPSWDPRKNLNCLQT-VHGSAQTTDRIRKKL 374


>Medtr5g019420.2 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC |
           chr5:7320468-7325119 | 20130731
          Length = 528

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 408 RSLNSMAAKRPFFLYGNVANISYDSWVKLSQFLYGVEPEFVNNQLFSALNRIEGYIHNLP 467
           R+L   A   P+F Y NVA      W  +S+FLY V+PE+V+++ F A  R  GY+HNLP
Sbjct: 198 RTLPENAIGPPYFYYENVALTPKGVWQTISRFLYDVQPEYVDSKYFCAAARKRGYVHNLP 257

Query: 468 VENRFHILPKPPMTIEDVLPRTKKWWPPWDSRKQLSCINCETRGVAQLCDRLGKFL 523
           + NRF +LP PP TI D  P  +KWWP WD RK L+C+     G AQ  DR+ K L
Sbjct: 258 IANRFPLLPLPPRTILDAFPLLRKWWPSWDPRKNLNCLQT-VHGSAQTTDRIRKKL 312


>Medtr0336s0070.1 | hypothetical protein | HC |
           scaffold0336:17788-19350 | 20130731
          Length = 168

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 84/133 (63%), Gaps = 17/133 (12%)

Query: 1   MAGSSSGRGGKNGMDLTVXXXXXXXXXXXXXXXXXXPEPPYTTTFSRDVGDNVASSSGSK 60
           M G+S+GRGGKN +                         PYT   SRD  +  ASSSGSK
Sbjct: 22  MTGTSNGRGGKNPVFPKTEDFDYELS-------------PYTA-LSRDFRETAASSSGSK 67

Query: 61  LRSFFIGMGFLPSLVDKVIEENGEGNSDTLLEILLRSARKSNGDSSDFLEGSLNTSKGRR 120
           +R FFIGMGFLP LVDKVIEENGE NSD LLEILLR +  +NGDSSD LEGSLNT++  R
Sbjct: 68  VRGFFIGMGFLPGLVDKVIEENGEENSDALLEILLRCS--TNGDSSDSLEGSLNTNE-HR 124

Query: 121 SAPSVCPAGHSKE 133
           S P+  P  HSKE
Sbjct: 125 SIPNFFPNAHSKE 137


>Medtr6g005580.1 | DNA (cytosine-5)-methyltransferase DRM1/2 | HC |
           chr6:838285-828430 | 20130731
          Length = 588

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 408 RSLNSMAAKRPFFLYGNVANISYDSWVKLSQFLYGVEPEFVNNQLFSALNRIEGYIHNLP 467
           R L   A   P+F Y NVA      W  +S+FLY VEPE+V+++ F A  R  GYIHNLP
Sbjct: 258 RRLPENAVGPPYFYYENVALAPKGVWQTISRFLYDVEPEYVDSKYFCAAARKRGYIHNLP 317

Query: 468 VENRFHILPKPPMTIEDVLPRTKKWWPPWDSRKQLSCINCETRGVAQLCDRLGK 521
           + NRF +LP PP TI D  P  ++WWP WD R +L+C+       A+L DR+ K
Sbjct: 318 IVNRFPLLPLPPRTIHDAFPLLRRWWPTWDPRTKLNCLQT-VHASAKLTDRIRK 370