Miyakogusa Predicted Gene
- Lj4g3v2250340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2250340.1 Non Characterized Hit- tr|I1KMJ7|I1KMJ7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22981 PE,76.19,0,YTH
DOMAIN-CONTAINING,NULL; YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING,NULL;
seg,NULL; YTH,YTH domain,CUFF.50700.1
(665 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g123630.1 | evolutionarily carboxy-terminal region protein... 966 0.0
Medtr2g032660.1 | evolutionarily carboxy-terminal region protein... 857 0.0
Medtr2g063460.1 | evolutionarily carboxy-terminal region protein... 315 1e-85
Medtr2g063460.2 | evolutionarily carboxy-terminal region protein... 315 1e-85
Medtr4g005110.1 | evolutionarily carboxy-terminal region protein... 310 3e-84
Medtr8g088390.1 | evolutionarily carboxy-terminal region protein... 293 3e-79
Medtr8g088390.2 | evolutionarily carboxy-terminal region protein... 293 4e-79
Medtr7g085500.1 | evolutionarily carboxy-terminal region protein... 280 3e-75
Medtr6g032970.1 | evolutionarily carboxy-terminal region protein... 263 5e-70
Medtr2g005840.3 | evolutionarily carboxy-terminal region protein... 261 1e-69
Medtr2g005840.2 | evolutionarily carboxy-terminal region protein... 261 1e-69
Medtr2g005840.5 | evolutionarily carboxy-terminal region protein... 261 1e-69
Medtr2g005840.1 | evolutionarily carboxy-terminal region protein... 261 2e-69
Medtr2g005840.4 | evolutionarily carboxy-terminal region protein... 261 2e-69
Medtr2g032070.1 | Yth domain protein, putative | HC | chr2:12195... 76 1e-13
Medtr2g029540.1 | cleavage and polyadenylation specificity facto... 67 6e-11
>Medtr4g123630.1 | evolutionarily carboxy-terminal region protein |
HC | chr4:50901357-50896559 | 20130731
Length = 651
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/666 (73%), Positives = 543/666 (81%), Gaps = 29/666 (4%)
Query: 1 MFNEGAPEFVVDQNLYYPAATNYEYYCTGYETPGEWEDHHRIFGLDGPDIQYTGAQNENF 60
MFNEGAPEFVVDQ++YYPA TNY +YCTG+E+PGEWEDHHRIFG+DGPDIQYTGAQ+E+F
Sbjct: 1 MFNEGAPEFVVDQSMYYPAPTNYGFYCTGFESPGEWEDHHRIFGVDGPDIQYTGAQDESF 60
Query: 61 PYVYYTPSYGFAQSPYNPYNPYIPGAMIEVDGSFGGVQQYYSVPNFQNPVSASPYIPLVQ 120
PYVYYTP+YGFAQSPYNPYNPYIPGAMI VDGSFGG QQYYS+PN+QNP+S+ YIPLVQ
Sbjct: 61 PYVYYTPNYGFAQSPYNPYNPYIPGAMIGVDGSFGGEQQYYSLPNYQNPISSPTYIPLVQ 120
Query: 121 PDNYLDSSIDSLFDNSASVSRPDGRGLQNKFNSASGSFTRNSSKQLSNQTSSLARVSEGP 180
PDN+ SS+DSL+DNSASV+R DGRG ++KFNSAS +FTRNSSK SNQTSS RV EGP
Sbjct: 121 PDNFHHSSVDSLYDNSASVNRLDGRGSKHKFNSASAAFTRNSSKPSSNQTSSFLRVPEGP 180
Query: 181 KANAGVKNDFTNQSVSGSGFL-------HQAQSADASIQRLNTVSNGNVLSHHNQLKVAP 233
+ANA K D TN SV SGFL H A+SAD S Q ++T SNGNVL H NQ KVA
Sbjct: 181 RANALAKKDSTNGSVPNSGFLNFASSPSHLARSADVSFQSVDTFSNGNVLPHRNQFKVAA 240
Query: 234 PLSNRFSNYSSNTNGQSAFAKLRPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQLPV 293
PLSN FS+Y SN NGQSA AKLRPKV+ + DVN S +LGEQNRGPR SRPKH LP+
Sbjct: 241 PLSNGFSDYGSNANGQSAIAKLRPKVHVAPI--DVNRSGVLLGEQNRGPRISRPKHHLPI 298
Query: 294 KAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSST 353
KAYT KSG N QENII Y DQYNREDFPIDNE AKFFVIKSYSEDDVHKSIKYNVWSST
Sbjct: 299 KAYTAKSGDANTQENII-YTDQYNREDFPIDNEIAKFFVIKSYSEDDVHKSIKYNVWSST 357
Query: 354 THGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQ 413
HGNKKLQSAYEDARR A GKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQ
Sbjct: 358 PHGNKKLQSAYEDARRKATGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQ 417
Query: 414 DKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHT 473
DKW+GSFP+KWHI+KDVPNGNFRHIILENNE KPVTNSRDTQEI YRKGLEML++FK++T
Sbjct: 418 DKWSGSFPVKWHIIKDVPNGNFRHIILENNEFKPVTNSRDTQEIMYRKGLEMLKIFKNYT 477
Query: 474 LKTSLLDDFIYYENRQKIMEQEKAKVLFKSFESPLFVPALEPPQKMNFVTNIPPVSAVKN 533
LKTSLLDDFIYYENRQK+M++EK K L K F S +P L PP+K++ V I P S KN
Sbjct: 478 LKTSLLDDFIYYENRQKVMQEEKTKFLMKGFVS---IPVLAPPRKLDNVFEIHPASDEKN 534
Query: 534 PKMDDESDSFKQT--TSADRIVSSSNVTSTCASVXXXXXXXXXXXXXGLVDREDISSVLK 591
K DE S K T ++A V+SS+VTST + VD++DISSVLK
Sbjct: 535 SKT-DELGSVKHTSVSTAAHNVNSSDVTSTTS--------VDEKVENDAVDKQDISSVLK 585
Query: 592 IGSVTITPKQTETKPYSNGVANKEPNDVVTVGSMQVRVNGFSESSGFLKVGSIPLDPRAL 651
IGSVTITP+Q ETKP +N EP DVVTVGSMQVRVNGFSESSG LKVGSIPLDPR+L
Sbjct: 586 IGSVTITPRQVETKP-----SNTEPIDVVTVGSMQVRVNGFSESSGVLKVGSIPLDPRSL 640
Query: 652 KPDKGT 657
+ KGT
Sbjct: 641 QAGKGT 646
>Medtr2g032660.1 | evolutionarily carboxy-terminal region protein |
HC | chr2:12289044-12294565 | 20130731
Length = 694
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/663 (64%), Positives = 522/663 (78%), Gaps = 22/663 (3%)
Query: 1 MFNEGAPEFVVDQNLYYPAATNYEYYCTGYETPGEWEDHHRIFGLDGPDIQYTGAQNENF 60
M NEGAPEFV DQ++YYPAATNY YYCTG+E+PGEWED +RIFG+DGPD+QY G Q+E+F
Sbjct: 37 MNNEGAPEFV-DQSMYYPAATNYGYYCTGFESPGEWEDQYRIFGVDGPDVQYMGGQDESF 95
Query: 61 PYVYYTPSYGFAQSPYNPYNPYIPGAMIEVDGSFGGVQQYYSVPNFQNPVSASPYIPLVQ 120
P VYY +YG+AQSPYNPYNPYIPGA + VDGS+GG Q YY++PN QNP S + Y PLVQ
Sbjct: 96 PLVYYN-NYGYAQSPYNPYNPYIPGAAVGVDGSYGGGQSYYTLPNHQNPASPA-YDPLVQ 153
Query: 121 PDNYLDSSIDSLFDNSASVSRPDGRGLQNKFNSASGSFTRNSSKQLSNQTSSLARVSEGP 180
DN+ DSS +S+F SASVSR DGRGL+ KFN ASG+F+RNS +NQTSS+A VSEGP
Sbjct: 154 LDNFPDSSANSVFGASASVSRSDGRGLKQKFNEASGNFSRNSLILSTNQTSSVAMVSEGP 213
Query: 181 KANAGVKNDFTNQSVSGSGFL-------HQAQSADASIQRLNTVSNGNVLSHHNQLKVAP 233
+AN G K D T+ +VSGS L HQ + DAS+Q ++T+SNGNV+SHHNQL VA
Sbjct: 214 RANNGRKQDLTHANVSGSRSLNAASSAVHQDRRTDASVQPVDTISNGNVISHHNQLIVAS 273
Query: 234 PLSNRFSNYSSNTNGQSAFAKLRPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQLPV 293
S FS++++N NGQS+ AKLRPK G SD N S+DVLG+QNRGPRTSR KHQL V
Sbjct: 274 SRSG-FSDFAANANGQSSVAKLRPKA-LGLGSSDGNVSADVLGDQNRGPRTSRSKHQLSV 331
Query: 294 KAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSST 353
KAYTTK GG N Q++II+Y DQYN+EDFP+D +NAKFFVIKSYSEDDVHKSIKYNVWSST
Sbjct: 332 KAYTTKVGGGNEQDSIIIYTDQYNKEDFPLDYDNAKFFVIKSYSEDDVHKSIKYNVWSST 391
Query: 354 THGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQ 413
HGN+KL +AYED ++++A KSG CPIFLFFSVNASGQFCGVAEM+G VDFNKDMDFWQQ
Sbjct: 392 VHGNRKLGNAYEDTKKVSAEKSGVCPIFLFFSVNASGQFCGVAEMIGSVDFNKDMDFWQQ 451
Query: 414 DKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHT 473
DKW+GSFP+KWHI+KDVPN NFRHIIL+NNENKPVTNSRDTQEI Y KGLEML++FK+HT
Sbjct: 452 DKWSGSFPVKWHIIKDVPNPNFRHIILDNNENKPVTNSRDTQEIMYSKGLEMLKIFKNHT 511
Query: 474 LKTSLLDDFIYYENRQKIMEQEKAKVLFKSFESPLFVPALEPPQKMNFVTNIPPVSAVKN 533
LKTSLLDDF+YYENRQKIM +KAK+L +SF+SP+F+P+L P+K+N V + PP KN
Sbjct: 512 LKTSLLDDFMYYENRQKIMHDQKAKLLIRSFKSPVFIPSL-APRKLNIVPDKPPSKYEKN 570
Query: 534 PKMDDESDSFKQTTSADRIVSSSNVTSTCASVXXXXXXXXXXXXXGLVDREDISSVLKIG 593
++ D+S+S Q + +S+S + V + EDISS+LKIG
Sbjct: 571 ARLKDDSNSLNQMS-----ISNSEQNIHISDVPNIKSVNEQAEKIAV--EEDISSILKIG 623
Query: 594 SVTITPKQTETKPYSNGVANKEPNDVVTVGSMQVRVNGFSESSGFLKVGSIPLDPRALKP 653
S+ ITPKQ TK +G+ ++E D++TVGS+ V+VNG + SSGFLKVGSI LDP+AL+P
Sbjct: 624 SIAITPKQVATK--QSGIGSREQIDILTVGSVPVKVNGLAGSSGFLKVGSIQLDPKALQP 681
Query: 654 DKG 656
KG
Sbjct: 682 QKG 684
>Medtr2g063460.1 | evolutionarily carboxy-terminal region protein |
HC | chr2:26745358-26750617 | 20130731
Length = 584
Score = 315 bits (806), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 211/487 (43%), Positives = 279/487 (57%), Gaps = 60/487 (12%)
Query: 35 EWEDHHRIFGLDGPDIQYTGAQNENFPYVYYTPSYGFAQSPYNPYNPYIPGAMIEVDGSF 94
E E+ G D D QY Q +N YVY P Y S Y P N PG ++
Sbjct: 95 EQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGYQTGYSSYFPVN--TPGVDVQY---- 148
Query: 95 GGVQQYYSVPNFQNPVSA----SPYIPLVQPDNYLDSSI---DSLFDNSAS--VSRPDGR 145
Q Y FQ P+ + SPY L+ DSS+ D N + S+P GR
Sbjct: 149 ---QVYPPGSVFQQPIGSPGYISPYGELLPSTYSWDSSLTTQDVAQGNRYNELASKPSGR 205
Query: 146 GLQNKFNSASGSFTRNSSKQLSNQTSSLARVSEG--PKANAGVKNDFTNQ-------SVS 196
+ F+S S + + SK + + S + +G P + + NQ S+S
Sbjct: 206 SI---FSSQSRTGSGIVSKSVPSSNVSNSSEVKGSPPILDVSSTHVKRNQPKQANKASIS 262
Query: 197 GSGFLHQAQSADASIQRLNTVSNGNVLSHHNQLKVAPPLSNRFSNY-SSNTNGQSAFAKL 255
G LH +DA + V+ S +NQ K P N F N +++T G + KL
Sbjct: 263 GP-VLH----SDAMPKGSFPVAK---FSAYNQGKSGFPYQNNFPNMKATSTKGWVSTEKL 314
Query: 256 RPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQE----NIIV 311
K+ S VN D L EQN+GPRT+ K T SGG++ + N +
Sbjct: 315 -------KLRSKVN---DSLNEQNQGPRTANAKG-------TLNSGGNSEDKSVNGNTKI 357
Query: 312 YPDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIA 371
DQYN DFP ++A FFVIKSYSEDDVHKSIKY+VW+ST +GNK+L +A++DA+
Sbjct: 358 RTDQYNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRM 417
Query: 372 AGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVP 431
K CP+FLFFSVNASGQFCGVAEM+G VDFNK MDFWQQDKWNG FP+KWHI+KD+P
Sbjct: 418 EEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIP 477
Query: 432 NGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKI 491
N RHIILENN++KPVTNSRDTQEI + +G+EML +FK++ +TS+LDDF +YE+RQK+
Sbjct: 478 NPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNYVSRTSILDDFDFYESRQKV 537
Query: 492 MEQEKAK 498
M+++K +
Sbjct: 538 MQEKKIR 544
>Medtr2g063460.2 | evolutionarily carboxy-terminal region protein |
HC | chr2:26745358-26750617 | 20130731
Length = 582
Score = 315 bits (806), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 211/487 (43%), Positives = 279/487 (57%), Gaps = 60/487 (12%)
Query: 35 EWEDHHRIFGLDGPDIQYTGAQNENFPYVYYTPSYGFAQSPYNPYNPYIPGAMIEVDGSF 94
E E+ G D D QY Q +N YVY P Y S Y P N PG ++
Sbjct: 93 EQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGYQTGYSSYFPVN--TPGVDVQY---- 146
Query: 95 GGVQQYYSVPNFQNPVSA----SPYIPLVQPDNYLDSSI---DSLFDNSAS--VSRPDGR 145
Q Y FQ P+ + SPY L+ DSS+ D N + S+P GR
Sbjct: 147 ---QVYPPGSVFQQPIGSPGYISPYGELLPSTYSWDSSLTTQDVAQGNRYNELASKPSGR 203
Query: 146 GLQNKFNSASGSFTRNSSKQLSNQTSSLARVSEG--PKANAGVKNDFTNQ-------SVS 196
+ F+S S + + SK + + S + +G P + + NQ S+S
Sbjct: 204 SI---FSSQSRTGSGIVSKSVPSSNVSNSSEVKGSPPILDVSSTHVKRNQPKQANKASIS 260
Query: 197 GSGFLHQAQSADASIQRLNTVSNGNVLSHHNQLKVAPPLSNRFSNY-SSNTNGQSAFAKL 255
G LH +DA + V+ S +NQ K P N F N +++T G + KL
Sbjct: 261 GP-VLH----SDAMPKGSFPVAK---FSAYNQGKSGFPYQNNFPNMKATSTKGWVSTEKL 312
Query: 256 RPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQE----NIIV 311
K+ S VN D L EQN+GPRT+ K T SGG++ + N +
Sbjct: 313 -------KLRSKVN---DSLNEQNQGPRTANAKG-------TLNSGGNSEDKSVNGNTKI 355
Query: 312 YPDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIA 371
DQYN DFP ++A FFVIKSYSEDDVHKSIKY+VW+ST +GNK+L +A++DA+
Sbjct: 356 RTDQYNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRM 415
Query: 372 AGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVP 431
K CP+FLFFSVNASGQFCGVAEM+G VDFNK MDFWQQDKWNG FP+KWHI+KD+P
Sbjct: 416 EEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIP 475
Query: 432 NGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKI 491
N RHIILENN++KPVTNSRDTQEI + +G+EML +FK++ +TS+LDDF +YE+RQK+
Sbjct: 476 NPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNYVSRTSILDDFDFYESRQKV 535
Query: 492 MEQEKAK 498
M+++K +
Sbjct: 536 MQEKKIR 542
>Medtr4g005110.1 | evolutionarily carboxy-terminal region protein |
HC | chr4:57104-67136 | 20130731
Length = 642
Score = 310 bits (794), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 205/520 (39%), Positives = 287/520 (55%), Gaps = 31/520 (5%)
Query: 2 FNEGAPEFVVDQNLYYPAATNYEYYCTGYETP-GEWEDHHRIFGLDGPDIQYTGAQNENF 60
F GA + + N+Y P A +Y G++ GEW+++ G +I G NEN
Sbjct: 50 FGSGADQPLYPPNVYAPQAQ--AFYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYNENQ 107
Query: 61 PYVYYTPSYGF-AQSPYNPYNPYI-PGAMIEVDGSFGGVQQYYSVPNFQN---PVSASPY 115
V+++ YGF Q PY PY+P P + D QQ+ P + N P PY
Sbjct: 108 SLVFHS-GYGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPY 166
Query: 116 I----PLVQPD--NYL--DSSIDSLFDNSASVSRPDGRGLQNKFNSASGSFTRNSSKQLS 167
+ P+ QP+ N L D ++S F + G + F A GSF+ + S+Q
Sbjct: 167 LNSPTPVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGSFPVAPGSFSFHESQQGF 226
Query: 168 NQTSSLARVSEGPKANAGVKNDF-----TNQSVSGSGFLHQAQSADASIQRLNTVSNGNV 222
+ + S S+ K + ++ Q GS + AS Q+ + G+
Sbjct: 227 DGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSS 286
Query: 223 LSHHNQLKVAPPLSN----RFSNYSSNTNGQSAFAKLRPKVNAGKVLSDVNGSSDVLGEQ 278
+ + + ++ P S+ S S+N + R NG+ D+L EQ
Sbjct: 287 SNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQ 346
Query: 279 NRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAKFFVIKSYSE 338
NRGPR S+ K+ + + +NA + NR DF D ++AKFFVIKSYSE
Sbjct: 347 NRGPRASKLKNHISSENNAIDGSKNNA-STAKFQDESLNRPDFATDFKDAKFFVIKSYSE 405
Query: 339 DDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEM 398
D+VHKSIKY VW+ST +GN+KL +AY A+ K C IFLFFSVNAS QFCGVAEM
Sbjct: 406 DNVHKSIKYGVWASTPNGNRKLDAAYCQAKE----KQDACRIFLFFSVNASAQFCGVAEM 461
Query: 399 VGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVTNSRDTQEIT 458
VGPV+F+K +DFWQQDKW+G FP+KWHI+KDVPN FRHI+LENN+NKPVTNSRDTQE+
Sbjct: 462 VGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVK 521
Query: 459 YRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
++G+EML +FK++ TS+LDDF +YE+RQK M++ KA+
Sbjct: 522 LQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKAR 561
>Medtr8g088390.1 | evolutionarily carboxy-terminal region protein |
HC | chr8:36620729-36616338 | 20130731
Length = 670
Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 187/273 (68%), Gaps = 17/273 (6%)
Query: 242 YSSNTNGQSAFA---KLRPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQ-------L 291
Y S TNG++ A K + + G N ++D L E NRGPR K+Q L
Sbjct: 322 YDSRTNGRAWLAVDNKYKTRGRNGGYFGYGNENTDGLNELNRGPRAKGGKNQKVFVPTVL 381
Query: 292 PVKAYTTKSGG-DNAQENIIVYPD--QYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYN 348
VK D +E PD QYN+ DFP + +AKFFVIKSYSEDD+HKSIKYN
Sbjct: 382 TVKGQNVPVNTVDEEKEKNSTTPDREQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYN 441
Query: 349 VWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDM 408
VW+ST +GNKKL +AY++A++ KSGGCPIFL FSVN SGQF G+AEM GPVDFNK +
Sbjct: 442 VWASTQNGNKKLDAAYQEAQQ----KSGGCPIFLLFSVNTSGQFVGLAEMTGPVDFNKSL 497
Query: 409 DFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRV 468
++WQQDKW G FPLKWHIVKDVPN RHI LENNENKPVTNSRDTQEI GL++L++
Sbjct: 498 EYWQQDKWMGCFPLKWHIVKDVPNNVLRHITLENNENKPVTNSRDTQEIMLEPGLKLLKI 557
Query: 469 FKSHTLKTSLLDDFIYYENRQKIMEQEKAKVLF 501
FK ++ KT +LDDF +YE RQK + ++KAK F
Sbjct: 558 FKEYSSKTCILDDFGFYEGRQKTILEKKAKQQF 590
>Medtr8g088390.2 | evolutionarily carboxy-terminal region protein |
HC | chr8:36620643-36616338 | 20130731
Length = 605
Score = 293 bits (750), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 187/273 (68%), Gaps = 17/273 (6%)
Query: 242 YSSNTNGQSAFA---KLRPKVNAGKVLSDVNGSSDVLGEQNRGPRTSRPKHQ-------L 291
Y S TNG++ A K + + G N ++D L E NRGPR K+Q L
Sbjct: 257 YDSRTNGRAWLAVDNKYKTRGRNGGYFGYGNENTDGLNELNRGPRAKGGKNQKVFVPTVL 316
Query: 292 PVKAYTTKSGG-DNAQENIIVYPD--QYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYN 348
VK D +E PD QYN+ DFP + +AKFFVIKSYSEDD+HKSIKYN
Sbjct: 317 TVKGQNVPVNTVDEEKEKNSTTPDREQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYN 376
Query: 349 VWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDM 408
VW+ST +GNKKL +AY++A++ KSGGCPIFL FSVN SGQF G+AEM GPVDFNK +
Sbjct: 377 VWASTQNGNKKLDAAYQEAQQ----KSGGCPIFLLFSVNTSGQFVGLAEMTGPVDFNKSL 432
Query: 409 DFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRV 468
++WQQDKW G FPLKWHIVKDVPN RHI LENNENKPVTNSRDTQEI GL++L++
Sbjct: 433 EYWQQDKWMGCFPLKWHIVKDVPNNVLRHITLENNENKPVTNSRDTQEIMLEPGLKLLKI 492
Query: 469 FKSHTLKTSLLDDFIYYENRQKIMEQEKAKVLF 501
FK ++ KT +LDDF +YE RQK + ++KAK F
Sbjct: 493 FKEYSSKTCILDDFGFYEGRQKTILEKKAKQQF 525
>Medtr7g085500.1 | evolutionarily carboxy-terminal region protein |
HC | chr7:33129897-33124920 | 20130731
Length = 659
Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 199/540 (36%), Positives = 283/540 (52%), Gaps = 101/540 (18%)
Query: 36 WEDHHRIFGLDGPDIQYTGAQNENFPYVYYTPSYGFAQSPYNPY-NPYIPGAMIEVDGSF 94
W + LDG Q G +N Y+Y+ G+ +PY Y +P +++ DG
Sbjct: 79 WSGYSNYVNLDGGMTQ--GVYGDNCSYMYHQ---GYGYTPYGAYASPNSSSPVVQHDGQM 133
Query: 95 GGVQQY-YSVPNFQNPVSA-SPYIP--LVQPDNYLDSSIDS------LFDNSASVSRPDG 144
G+QQY Y + +P SA + P P + +++++ + + SVS +G
Sbjct: 134 YGLQQYQYPCSYYNSPTSADGSFAPNKTSVPQREMSTAVNADRITSNVMNKGNSVSMVNG 193
Query: 145 -----RGLQNKFNSASGSFTRNSSKQLSNQTSSLARVS-----EGPK-----ANAGVKND 189
GL+ F +S + N+ S Q SSL + +GP+ A + + D
Sbjct: 194 DCTNQNGLK-AFMKSSQHTSLNTKD--SYQGSSLPACAPLSGYQGPRLSTHGAQSAIPTD 250
Query: 190 FT----NQSVSGSGFLHQAQSA---DASIQR-------LNTVSNGNVLSHHNQLKVAP-- 233
+ QS G +Q A D S QR L N N H + +++ P
Sbjct: 251 VSLVSDRQSKHGGKVGLSSQVANIKDFSSQRNQRHSQSLPQFMNLNGSRHPSGMELLPGF 310
Query: 234 -----PLSNRFSNYSSNTN-----GQSAFA--------KLRPKVNAGKVLSDVNGSSDVL 275
P +N FS Y S+ G SA+ K R N G V +D + D
Sbjct: 311 MNGMYPSNNLFSQYGSSFRANSRYGSSAYGSRTGSFDNKYRATGN-GYVANDSRRNGDGF 369
Query: 276 GEQNRGPRTSRPK-----------------HQLPVKAYTTKSGGDNAQENIIVYPDQYNR 318
E N+GPR ++ LPVK+ D+ +++ +QYN
Sbjct: 370 SELNKGPRAAKSSDNKSVKSPEPVTLLLKGQNLPVKS-------DDEVVPLVLNKEQYNG 422
Query: 319 EDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGC 378
ED + +AKFF+IKSYSEDDVHKSIKY+VW+ST +GNKKL +AY++A GGC
Sbjct: 423 EDLSENYSDAKFFIIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEA--------GGC 474
Query: 379 PIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHI 438
PIFL FSVN SGQF G+AEM GPVDF+K +++WQQD+W G F +KWHI+KD+PNG RHI
Sbjct: 475 PIFLLFSVNTSGQFVGLAEMTGPVDFDKTVEYWQQDRWTGCFNVKWHIIKDIPNGVLRHI 534
Query: 439 ILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
LENNENKPVTNSRDTQE+ + KG++++++FK H KTS+LDDF +YE+R+K ++ K K
Sbjct: 535 TLENNENKPVTNSRDTQEVKFEKGVQIVKIFKEHASKTSILDDFGFYESREKTTQERKFK 594
>Medtr6g032970.1 | evolutionarily carboxy-terminal region protein |
HC | chr6:10204106-10209200 | 20130731
Length = 642
Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/254 (50%), Positives = 169/254 (66%), Gaps = 27/254 (10%)
Query: 262 GKVLSDVNGSSDVLGEQNRGPRTSRPK-----------------HQLPVKAYTTKSGGDN 304
G+ V + D GE N+GPR S LP+K+ D+
Sbjct: 325 GRGFDHVKRNVDGFGELNKGPRGSNSSDDKNDKSLGPVTLLLKGQDLPIKS------DDD 378
Query: 305 AQENIIVYPDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAY 364
+ + + QY ED + +AKFFVIKSYSEDD+HKS+KYNVW+ST +GNKKL +AY
Sbjct: 379 KEVHPVPDKQQYTGEDLSENYSDAKFFVIKSYSEDDIHKSMKYNVWTSTPNGNKKLDAAY 438
Query: 365 EDARRIAAGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKW 424
+A+ KS CPIFL FSVN SGQF G+AEMV PVDF++ +++WQQD+W G F +KW
Sbjct: 439 LEAKE----KSADCPIFLLFSVNTSGQFVGLAEMVSPVDFDRTVEYWQQDRWTGCFSVKW 494
Query: 425 HIVKDVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIY 484
I+KD+PN RHI LENNENKPVTNSRDTQE+ + KG+E+L++FK H+ KT +LDDF +
Sbjct: 495 RIIKDIPNNVLRHITLENNENKPVTNSRDTQEVKFEKGVEILKIFKEHSSKTCILDDFAF 554
Query: 485 YENRQKIMEQEKAK 498
YE R+K ++++KAK
Sbjct: 555 YEAREKTIQEKKAK 568
>Medtr2g005840.3 | evolutionarily carboxy-terminal region protein |
HC | chr2:345315-338760 | 20130731
Length = 481
Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 270 GSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAK 329
G S++ E RGPR HQ + +S + V DQYN DF E AK
Sbjct: 200 GESEMSKEITRGPRF----HQ---RNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAK 252
Query: 330 FFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNAS 389
F++IKS++EDD+HK IKY+VW+ST HGNKKL +A+++A + CPIFLFFSVNAS
Sbjct: 253 FYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNAS 312
Query: 390 GQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVT 449
GQF GVAEM+GPVDF KDM FW+ DK+NG FP+KWHI+KDVPN F HI L+ NENK VT
Sbjct: 313 GQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVT 372
Query: 450 NSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
SRDTQEIT ++GLEML++FKS+ KTSLLDDF +YENR+K+ ++ +
Sbjct: 373 FSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTE 421
>Medtr2g005840.2 | evolutionarily carboxy-terminal region protein |
HC | chr2:345315-338760 | 20130731
Length = 481
Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 270 GSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAK 329
G S++ E RGPR HQ + +S + V DQYN DF E AK
Sbjct: 200 GESEMSKEITRGPRF----HQ---RNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAK 252
Query: 330 FFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNAS 389
F++IKS++EDD+HK IKY+VW+ST HGNKKL +A+++A + CPIFLFFSVNAS
Sbjct: 253 FYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNAS 312
Query: 390 GQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVT 449
GQF GVAEM+GPVDF KDM FW+ DK+NG FP+KWHI+KDVPN F HI L+ NENK VT
Sbjct: 313 GQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVT 372
Query: 450 NSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
SRDTQEIT ++GLEML++FKS+ KTSLLDDF +YENR+K+ ++ +
Sbjct: 373 FSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTE 421
>Medtr2g005840.5 | evolutionarily carboxy-terminal region protein |
HC | chr2:345315-338762 | 20130731
Length = 481
Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 270 GSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAK 329
G S++ E RGPR HQ + +S + V DQYN DF E AK
Sbjct: 200 GESEMSKEITRGPRF----HQ---RNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAK 252
Query: 330 FFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNAS 389
F++IKS++EDD+HK IKY+VW+ST HGNKKL +A+++A + CPIFLFFSVNAS
Sbjct: 253 FYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNAS 312
Query: 390 GQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVT 449
GQF GVAEM+GPVDF KDM FW+ DK+NG FP+KWHI+KDVPN F HI L+ NENK VT
Sbjct: 313 GQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVT 372
Query: 450 NSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
SRDTQEIT ++GLEML++FKS+ KTSLLDDF +YENR+K+ ++ +
Sbjct: 373 FSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTE 421
>Medtr2g005840.1 | evolutionarily carboxy-terminal region protein |
HC | chr2:345315-338762 | 20130731
Length = 512
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 270 GSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAK 329
G S++ E RGPR HQ ++ + A V DQYN DF E AK
Sbjct: 231 GESEMSKEITRGPRF----HQRNSNPESSVVKDEFA---FTVCRDQYNLPDFQTKYETAK 283
Query: 330 FFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNAS 389
F++IKS++EDD+HK IKY+VW+ST HGNKKL +A+++A + CPIFLFFSVNAS
Sbjct: 284 FYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNAS 343
Query: 390 GQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVT 449
GQF GVAEM+GPVDF KDM FW+ DK+NG FP+KWHI+KDVPN F HI L+ NENK VT
Sbjct: 344 GQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVT 403
Query: 450 NSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
SRDTQEIT ++GLEML++FKS+ KTSLLDDF +YENR+K+ ++ +
Sbjct: 404 FSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTE 452
>Medtr2g005840.4 | evolutionarily carboxy-terminal region protein |
HC | chr2:345315-338762 | 20130731
Length = 512
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 7/229 (3%)
Query: 270 GSSDVLGEQNRGPRTSRPKHQLPVKAYTTKSGGDNAQENIIVYPDQYNREDFPIDNENAK 329
G S++ E RGPR HQ ++ + A V DQYN DF E AK
Sbjct: 231 GESEMSKEITRGPRF----HQRNSNPESSVVKDEFA---FTVCRDQYNLPDFQTKYETAK 283
Query: 330 FFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAAGKSGGCPIFLFFSVNAS 389
F++IKS++EDD+HK IKY+VW+ST HGNKKL +A+++A + CPIFLFFSVNAS
Sbjct: 284 FYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNAS 343
Query: 390 GQFCGVAEMVGPVDFNKDMDFWQQDKWNGSFPLKWHIVKDVPNGNFRHIILENNENKPVT 449
GQF GVAEM+GPVDF KDM FW+ DK+NG FP+KWHI+KDVPN F HI L+ NENK VT
Sbjct: 344 GQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVT 403
Query: 450 NSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENRQKIMEQEKAK 498
SRDTQEIT ++GLEML++FKS+ KTSLLDDF +YENR+K+ ++ +
Sbjct: 404 FSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTE 452
>Medtr2g032070.1 | Yth domain protein, putative | HC |
chr2:12195542-12196025 | 20130731
Length = 74
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 6 APEFVVDQNLYYPAATNYEYYCTGYETPGEWEDHHRIFGLDGPDIQY 52
+P F +YYPAATNY YYCTG+E+PGEWED RIFG+DGPD+Q+
Sbjct: 28 SPNFEQSGVMYYPAATNYGYYCTGFESPGEWEDQCRIFGVDGPDVQF 74
>Medtr2g029540.1 | cleavage and polyadenylation specificity factor
CPSF30 | HC | chr2:11072135-11082678 | 20130731
Length = 683
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 313 PDQYNREDFPIDNENAKFFVIKSYSEDDVHKSIKYNVWSSTTHGNKKLQSAYEDARRIAA 372
P+Q NR P+ +++F++KS + +++ S++ VW++ KL A++
Sbjct: 244 PNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVEN--- 300
Query: 373 GKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNKDMDFWQ----QDKWNGSFPLKWHIVK 428
+ L FSVN + F G A+M + + W+ + +F +KW +
Sbjct: 301 -------VILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLC 353
Query: 429 DVPNGNFRHIILENNENKPVTNSRDTQEITYRKGLEMLRVFKSHTLKTSLLDDFIYYENR 488
++ RH+ NEN PV SRD QE+ G ++ + + + L+ I E++
Sbjct: 354 ELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEP-DSELMAISIAAESK 412
Query: 489 QKIMEQEKAK 498
+ E+EKAK
Sbjct: 413 R---EEEKAK 419