Miyakogusa Predicted Gene

Lj4g3v2249070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2249070.1 tr|A6MZI1|A6MZI1_ORYSI Novel plant snare 11
(Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1,78.38,9e-18,Helical
region found in SNAREs,Target SNARE coiled-coil domain; Sec20,Sec20;
T_SNARE,Target SNARE co,CUFF.50565.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123910.1 | novel plant SNARE-like protein | HC | chr4:510...   480   e-136
Medtr2g045960.1 | novel plant SNARE-like protein | HC | chr2:201...   474   e-134
Medtr4g099140.1 | novel plant SNARE-like protein | HC | chr4:410...   311   3e-85

>Medtr4g123910.1 | novel plant SNARE-like protein | HC |
           chr4:51088786-51082714 | 20130731
          Length = 269

 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/263 (92%), Positives = 253/263 (96%)

Query: 1   MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
           MA+NL+MTPQLEQIHGEIRD FRALANGFQKLDKIKDSNRQSTQLEELTGKMR+CKRLIK
Sbjct: 1   MASNLKMTPQLEQIHGEIRDIFRALANGFQKLDKIKDSNRQSTQLEELTGKMRDCKRLIK 60

Query: 61  EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
           +FDREIKDE   NP EV+KQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFD GAGA
Sbjct: 61  DFDREIKDEGAGNPEEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDMGAGA 120

Query: 121 SEPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQT 180
           SE TAE NVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQT+EVGTQTA TLKGQT
Sbjct: 121 SESTAEGNVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTIEVGTQTASTLKGQT 180

Query: 181 EQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPN 240
           EQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV+AIIVVKIVNPN
Sbjct: 181 EQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPN 240

Query: 241 NKDIKDIPGLAPPAPTRRLLYVR 263
           NKDI+DIPGLAPP P+RRLLYVR
Sbjct: 241 NKDIRDIPGLAPPVPSRRLLYVR 263


>Medtr2g045960.1 | novel plant SNARE-like protein | HC |
           chr2:20128956-20137992 | 20130731
          Length = 265

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/263 (90%), Positives = 253/263 (96%)

Query: 1   MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 60
           MAT+LQMTPQ+EQIHG+I D FRALANGFQKLDKIKDSNRQS QLEELT KMRECK LIK
Sbjct: 1   MATSLQMTPQVEQIHGQIHDIFRALANGFQKLDKIKDSNRQSNQLEELTAKMRECKGLIK 60

Query: 61  EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 120
           EFDREIKDE+GRNPPEV+KQLNDEKQSMIKELNSYVALRKTYM+T+GNKKLELFDTGAG+
Sbjct: 61  EFDREIKDEDGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKLELFDTGAGS 120

Query: 121 SEPTAEENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQT 180
           S+P  EENVQLASEMSNQEL+NAG KTMDETDQAIERSKQVVHQT+EVGTQTA TLKGQT
Sbjct: 121 SQPMTEENVQLASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTATTLKGQT 180

Query: 181 EQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPN 240
           EQMGRIVNELDSIQFSIKKASQLVKEIGR+VATDKCIMLFLFLIVCGV+AIIVVKIVNP+
Sbjct: 181 EQMGRIVNELDSIQFSIKKASQLVKEIGRKVATDKCIMLFLFLIVCGVIAIIVVKIVNPH 240

Query: 241 NKDIKDIPGLAPPAPTRRLLYVR 263
           NKDI+DIPGLAPP PTRRLLYVR
Sbjct: 241 NKDIRDIPGLAPPVPTRRLLYVR 263


>Medtr4g099140.1 | novel plant SNARE-like protein | HC |
           chr4:41060024-41054160 | 20130731
          Length = 263

 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/257 (64%), Positives = 206/257 (80%), Gaps = 5/257 (1%)

Query: 7   MTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIKEFDREI 66
           ++  L +I G + D+FRAL+NGFQKL+KIKD++R+S QLEELT KMRECK LIKEFD+E+
Sbjct: 7   ISEDLAEIDGRVADNFRALSNGFQKLEKIKDASRKSRQLEELTEKMRECKGLIKEFDKEV 66

Query: 67  KDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGASEPTAE 126
           K  E     E +K LN++KQSMIKELNSYVAL+K Y + I NK++ELF+   G +E   E
Sbjct: 67  KALEASFDRETTKFLNEKKQSMIKELNSYVALKKQYASNIENKRIELFE---GPNEGDTE 123

Query: 127 ENVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQTEQMGRI 186
           ENV LAS MSN++L++ G + MD+TDQAIER K++V  TV +GT+TA  LK QTEQM R+
Sbjct: 124 ENVLLASAMSNEQLMDHGNRMMDDTDQAIERGKRIVQDTVNIGTETAAALKAQTEQMSRV 183

Query: 187 VNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKD 246
           VNELDSI FSIKKAS+LVKEIGRQVATDKCIM  LFLIV GV+AII+VK+V+P NKDI+D
Sbjct: 184 VNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPENKDIRD 243

Query: 247 IPGLAPPAPT--RRLLY 261
           IPGLAPP  T  RRLL+
Sbjct: 244 IPGLAPPVVTNNRRLLW 260