Miyakogusa Predicted Gene

Lj4g3v2238990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2238990.1 tr|I1LYF8|I1LYF8_SOYBN tRNA pseudouridine
synthase (Fragment) OS=Glycine max PE=3 SV=1,86.99,0,hisT_truA: tRNA
pseudouridine(38-40) synthase,Pseudouridine synthase I, TruA;
PSEUDOURIDYLATE SYNTHA,CUFF.50549.1
         (273 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123970.1 | tRNA pseudouridine synthase A | HC | chr4:5111...   489   e-138
Medtr1g097390.1 | tRNA pseudouridine synthase A | HC | chr1:4393...    81   1e-15
Medtr2g005830.1 | tRNA pseudouridine synthase A | HC | chr2:3378...    76   4e-14
Medtr8g101250.1 | tRNA pseudouridine synthase | HC | chr8:424998...    68   7e-12
Medtr8g101250.2 | tRNA pseudouridine synthase | HC | chr8:424998...    57   2e-08

>Medtr4g123970.1 | tRNA pseudouridine synthase A | HC |
           chr4:51119303-51121602 | 20130731
          Length = 322

 Score =  489 bits (1259), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/267 (85%), Positives = 244/267 (91%)

Query: 6   SGWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDK 65
           +GWQYQ SPPTVQC VE+AL RATKLQRKDL LVGASRTDAGVHAWGQVAHF+TPFNYD 
Sbjct: 56  AGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFLTPFNYDN 115

Query: 66  LEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDPFQRHFAYHS 125
           L+ +HAALNGLLPSDIRVREISP   EFHARFS KSKIYHYKIY+DTIMDPFQRHFAYH+
Sbjct: 116 LDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPFQRHFAYHN 175

Query: 126 PYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGS 185
            YKLNSA MREAA+Y++GKH+F+AF NASHND +PDPVKHIFRFDVKEMGALLQLEVEGS
Sbjct: 176 MYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFRFDVKEMGALLQLEVEGS 235

Query: 186 GFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
           GFLYRQVRNM ALL+QIGKEA PPDI+ HILASRDRKELAKY  + PPHGLCLVSINYNE
Sbjct: 236 GFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNE 295

Query: 246 SHLLPPPGCPANSFGRHHTIRKCKVPF 272
           SHLLPPPGCPA SFG HHTIRKCKV F
Sbjct: 296 SHLLPPPGCPAKSFGMHHTIRKCKVVF 322


>Medtr1g097390.1 | tRNA pseudouridine synthase A | HC |
           chr1:43937515-43930054 | 20130731
          Length = 435

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 117/285 (41%), Gaps = 51/285 (17%)

Query: 15  PTVQCVVERAL--TRATKLQRKDLCLVGASRTDAGVHAWGQV------------------ 54
           P+V+  + +AL  TR     +K+       RTD GV + GQV                  
Sbjct: 117 PSVESELFKALETTRLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSKLKISGVNNGS 176

Query: 55  -AHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTI 113
              FV+    +   D    +N  LPSDIR+    PVP +FHARFS   + Y Y  + +  
Sbjct: 177 SGEFVSEEQLEGELDYVRVINRELPSDIRILGWCPVPVDFHARFSCSGREYRYFFWKEN- 235

Query: 114 MDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANAS----HNDGVPDPVKHIFRF 169
                          LN   M  A    VG+H+F  F        H       +  I+  
Sbjct: 236 ---------------LNILAMENAGTKLVGEHDFRNFCKMDAANVHTYMRRITMFEIYAT 280

Query: 170 DVK-EMGALLQLEVEGSGFLYRQVRNMAALLVQIGKEALPPDIIQHILASRDRKELAKYA 228
           DV+ E   L  +++ G  FL+ QVR M A+L  IGK    PD+I  +L +       +Y 
Sbjct: 281 DVRYEDNQLWVIKIRGRAFLWHQVRCMVAVLFSIGKGLESPDVIDMLLDTNRIPRKPQYV 340

Query: 229 LFAPPHGLCLVSINYNESHLLPPPGCPANSFGR---HHTIRKCKV 270
           + A    L L S  + +   +    C ++S G+    H + +CK+
Sbjct: 341 M-ASEAPLVLQSCEFEDLKFI----CSSDS-GKALHAHLVNECKI 379


>Medtr2g005830.1 | tRNA pseudouridine synthase A | HC |
           chr2:337857-333131 | 20130731
          Length = 361

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 17/158 (10%)

Query: 7   GWQYQMSPPTVQCVVERALTRATKLQRKDLCLVGASRTDAGVHAWGQVAHF-VTPFNYDK 65
           G+Q Q++  TV  V+E A     K   + + +V +SRTDAGVHA   V H  +   +  K
Sbjct: 57  GFQKQLTDRTVAGVLEDAFC---KFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRK 113

Query: 66  LEDI---------HAALNGLLP---SDIRVREISPVPEEFHARFSAKSKIYHYKIYND-T 112
             ++           A+N  L     D+ V ++  VP +FHAR+ A+ + Y Y++ +   
Sbjct: 114 PGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPE 173

Query: 113 IMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAF 150
            +  F++  A+H P +LN   M+EA +  VG H+FS+F
Sbjct: 174 TLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSF 211


>Medtr8g101250.1 | tRNA pseudouridine synthase | HC |
           chr8:42499859-42506686 | 20130731
          Length = 435

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 108/285 (37%), Gaps = 49/285 (17%)

Query: 7   GWQYQMSPPTVQCVVERALTRATKLQRKDL----------CLVGASRTDAGVHAWGQVAH 56
           GWQ Q +  TVQ VVE +L +     +  L          C   A RTD GV A  QV  
Sbjct: 143 GWQKQPNLNTVQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCS 202

Query: 57  FVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDTIMDP 116
           F T     K  +I  A+N   P  +RV  +  V   FH  FSAK + Y Y        D 
Sbjct: 203 FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDK 262

Query: 117 FQR--------HFAYHSPYKLNSA--VMREAAQYYVGKHN-----------------FSA 149
            Q          F Y+     +S   + +E   Y  G                    F+ 
Sbjct: 263 DQSGGNGESCDSFIYNEICDSDSKDELEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFAR 322

Query: 150 FANASHNDGVPDP--VKHIFRFDVK-------EMGALLQLEVEGSGFLYRQVRNMAALLV 200
              AS NDG P    V H    + K       E   ++ +E+  + FL + VR + A  +
Sbjct: 323 DTKASRNDGPPTECFVHHARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTI 382

Query: 201 QIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNE 245
           +        D +  ++ +  R+  A     APP GLCLV + Y E
Sbjct: 383 REAAAGAEDDALLKLMDATCRRATAPP---APPDGLCLVDVGYAE 424


>Medtr8g101250.2 | tRNA pseudouridine synthase | HC |
           chr8:42499876-42506683 | 20130731
          Length = 355

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 7   GWQYQMSPPTVQCVVERALTRATKLQRKDL----------CLVGASRTDAGVHAWGQVAH 56
           GWQ Q +  TVQ VVE +L +     +  L          C   A RTD GV A  QV  
Sbjct: 143 GWQKQPNLNTVQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCS 202

Query: 57  FVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHY 106
           F T     K  +I  A+N   P  +RV  +  V   FH  FSAK + Y Y
Sbjct: 203 FYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLY 252