Miyakogusa Predicted Gene

Lj4g3v2225650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2225650.1 tr|B9HZ51|B9HZ51_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568032 PE=4
SV=1,27.27,0.000000000000001,seg,NULL,CUFF.50534.1
         (378 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g124160.1 | hypothetical protein | LC | chr4:51273467-5127...   348   5e-96
Medtr4g007240.1 | F-box protein | HC | chr4:1050614-1049403 | 20...   114   2e-25
Medtr8g102000.1 | F-box protein | LC | chr8:42876159-42874960 | ...   100   3e-21
Medtr5g089230.1 | hypothetical protein | LC | chr5:38783476-3878...    75   1e-13

>Medtr4g124160.1 | hypothetical protein | LC |
           chr4:51273467-51274864 | 20130731
          Length = 424

 Score =  348 bits (893), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 241/385 (62%), Gaps = 24/385 (6%)

Query: 1   MNQEQHHKEWCLNFVSKRNLLIVFLPKXXXXXXXXXXXXXXXXXGRKFDPKLDD-ERKKS 59
           M ++++ K+W  NF+SKR LLI F P                  GRKFDPKLD+  RKK 
Sbjct: 55  MKEQENQKKWHFNFISKRKLLISFSPNLNLSTPENQISLCFL--GRKFDPKLDNITRKKH 112

Query: 60  ALYSRIVGYSNGLLLCKKTSRGRVYHVTNPMTREWTKXXXXXXXXTGHNQRDCVFEGFVC 119
            LYSRIVG+SNGL LCKKT+RGRVYHV N +T++W K        TGHN+RD V EGFVC
Sbjct: 113 VLYSRIVGFSNGLFLCKKTTRGRVYHVCNILTKDWIKLPLPPPPGTGHNKRDRVLEGFVC 172

Query: 120 EPFYQV-EANNVVTLNSHNRFRVVRFPWLN---DRVFSHTPKFEFEMVVFSSETGQWCRK 175
           EP+Y + E+   V+ N H+RFRVVRFP        +     K EFEMVVFSSETGQW +K
Sbjct: 173 EPYYSIGESTKKVSFN-HHRFRVVRFPCFEGTISEILWGITKSEFEMVVFSSETGQWSKK 231

Query: 176 TVSCPKG--FVQTDILIHAVAHRGRLYFMGRMDLLVYDPFNNDAHQCCHTIDYPIHSPYP 233
            VSCP G  F +  IL + VAH   LYFMG+  +LVYDPFNND  + C  I++P  +   
Sbjct: 232 NVSCPNGLSFTRPAILPYVVAHENILYFMGKTSILVYDPFNND--EKCEIINFPSDAS-A 288

Query: 234 RDLPFTGHVGVSCGNIRIANISCSFDPHVLNTMTVWELEYQDDSSCCCWHLVHKTFIPGQ 293
            D+ F GHVGV  G  R+A   C+    V     VWELE QD S    W L+H T  P  
Sbjct: 289 NDILFNGHVGVCRGKFRMACF-CTLRCFV----KVWELE-QDYS----WSLLHVTCFPPI 338

Query: 294 DRRSCIRPE-FETRRECETVDLGMQVRAFHPHHGDVVFFQRAHSIFCGNLRTNQFDTVGY 352
             R CI  E   T    E VD+G QVRA HP+ GDVVF QRAH IF GNL+TN+ + VGY
Sbjct: 339 PVRDCIVDELLMTGGRNEIVDMGTQVRAIHPYDGDVVFLQRAHRIFVGNLKTNEIEGVGY 398

Query: 353 GIHGFQVLQIISIDLPGWPAPVPSI 377
           GIHGFQ LQ+IS+DLP WP P+PSI
Sbjct: 399 GIHGFQSLQMISLDLPLWPTPIPSI 423


>Medtr4g007240.1 | F-box protein | HC | chr4:1050614-1049403 |
           20130731
          Length = 383

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 149/313 (47%), Gaps = 54/313 (17%)

Query: 65  IVGYSNGLLLCKKT--SRGRVYHVTNPMTREWTKXXXXXXXXTGHNQRDCVFE-GFVCEP 121
           + G SNGL LC K   + G  Y++ +P+ ++           +     + +F  GF+C P
Sbjct: 107 VCGCSNGLFLCCKNRYTYGIDYYIYDPLMKKCVPIPP-----SPSTCNESLFAVGFICNP 161

Query: 122 FYQVEANNVVTLNSHNR-FRVVRFPWLNDRVFSHTPKFEFEMVVFSSETGQWCRKTVSCP 180
                   V+T + + R FRVV       R+F      E E+ VFSSETG W R  +  P
Sbjct: 162 ----TGAAVITPSPNERNFRVVIIKSFIKRLF------EMELYVFSSETGSWKRVVMIIP 211

Query: 181 KGFVQTDILIHAVAHRGRLYFMGRMDLLVYDPFNNDAHQCCHTIDYPIHSPYPRDLPFTG 240
            GF      + + ++ G LYFMGR  + V+DP+ N       T++YP+ +     + F G
Sbjct: 212 DGFAFAPHWLLSFSYGGSLYFMGRTSIFVFDPYTNTR----DTLNYPLEADSMNIMSF-G 266

Query: 241 HVGVSCGNIRIANISCSFDPHVLNTMTVWELEYQDDSSCCCWHLVHKTFIPGQDRRSCIR 300
            +G+SCG +RIA+I         N + VWEL  ++      W L+H   I  +       
Sbjct: 267 FLGISCGCLRIADIG-------QNNLRVWELVEKNH-----WDLLHSIDISKK------- 307

Query: 301 PEFETRRECETVDLGMQVRAFHPHHGDVVFFQR-AHSIFCGNLRTNQFDTV-GY---GIH 355
               +++ C   +   +V  FHP+ GD+V+    A  +F  NLRT+ F+ V GY    I 
Sbjct: 308 ---MSKKFCG--NYYKKVAGFHPYDGDIVYLHSYADGVFICNLRTDTFEVVPGYEKIDIS 362

Query: 356 GFQVLQIISIDLP 368
            FQ L+I  + LP
Sbjct: 363 PFQ-LEIADLLLP 374


>Medtr8g102000.1 | F-box protein | LC | chr8:42876159-42874960 |
           20130731
          Length = 399

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 145/313 (46%), Gaps = 49/313 (15%)

Query: 63  SRIVGYSNGLLLC--KKTSRGRVYHVTNPMTREWTKXXXXXXXXTGHNQRDCVFEGFVCE 120
           S I G SNGL LC   + + G  Y+V +P+ +            T       V  GFVC+
Sbjct: 120 SSICGCSNGLFLCCNNRYTYGSGYYVYDPLVKGRIDIPDPSPPLTCIENLYAV--GFVCK 177

Query: 121 PFYQVEANNVVTLNSHNRFRVVRFPWLNDRVFSHTPKFEFEMVVFSSETGQWCRKTVSCP 180
           P  +V A      N HN FRVV       RV       E ++ VFSS+TGQW    +  P
Sbjct: 178 PKQKVTARRS---NKHN-FRVVIIKSFLVRVS------EIKVDVFSSKTGQWNHIVMKIP 227

Query: 181 KGFVQTDILIHAVAHRGRLYFMGRMDLLVYDPFNNDAHQCCHTIDYPIHSPYPRDLPFTG 240
           KGF      + + ++ G+LYFMGR ++ V+DP++       +TI+YP  +    ++   G
Sbjct: 228 KGFAFAPHWLLSFSYCGKLYFMGRANIFVFDPYSRKR----YTINYPSEAD-AMNIVSCG 282

Query: 241 HVGVSCGNIRIANISCSFDPHVLNTMTVWELEYQDDSSCCCWHLVHKTFIPGQDRRSCIR 300
            +G+SC  +RIA+I         + + VWE   ++      W L+H           CI 
Sbjct: 283 FLGISCSRLRIADIR-------QHDLRVWEHVEKNQ-----WDLLH-----------CID 319

Query: 301 PEFETRRECETVDLGMQVRAFHPHHGDVVFFQR-AHSIFCGNLRTNQFDTV-GY---GIH 355
              +  ++   V+   +V  FHP  GD+V+    A  IF   L T +F+ V GY    I 
Sbjct: 320 ISTKLPQKF-CVNYYKRVAGFHPFDGDIVYLHSYAEGIFVCYLGTRKFEAVPGYEKADIS 378

Query: 356 GFQVLQIISIDLP 368
            FQ L+I  + LP
Sbjct: 379 PFQ-LEISDLLLP 390


>Medtr5g089230.1 | hypothetical protein | LC |
           chr5:38783476-38783946 | 20130731
          Length = 113

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 317 QVRAFHPHHGDVVFFQRAHSIFCGNLRTNQFDTVGYGIHGFQVLQIISIDLPGWPAPVPS 376
           QVR FH +HGDV F QR H  F  NL++N+ D +GYGIH FQ L +IS+DL  WP  +PS
Sbjct: 4   QVRTFHSYHGDV-FLQRPHRTFVSNLKSNKIDGIGYGIHVFQSLSMISLDLSFWPPTIPS 62