Miyakogusa Predicted Gene

Lj4g3v2215590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215590.1 Non Characterized Hit- tr|B4FE34|B4FE34_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,75,9e-17,Tmemb_14,Uncharacterised protein family UPF0136,
Transmembrane; seg,NULL; TRANSMEMBRANE PROTEIN 14, ,CUFF.50538.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123593.1 | transmembrane protein 14C | HC | chr4:51409313...   111   5e-25

>Medtr4g123593.1 | transmembrane protein 14C | HC |
           chr4:51409313-51412438 | 20130731
          Length = 228

 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 99/230 (43%), Gaps = 6/230 (2%)

Query: 1   MAEAVATFAISSST--SLPLRRTPIYSYRSQSSTLRFLPSRFPAFGYSARSDRHVYAAVV 58
           MAE  A F +S+ST  SL LR T   S+   + T  FL S  P+F Y + S+ H   AVV
Sbjct: 1   MAETAAVFGVSNSTIPSLSLRPT-TGSHTPTTFTRSFLASP-PSFPYLSLSNSHSQLAVV 58

Query: 59  SSDSITA--PVITPELDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 116
           SSDS T    +  P+LD T                                        R
Sbjct: 59  SSDSKTTQFDLSAPDLDNTGGGGDIKGNGDDFSGGGGGGEGGGGGDDSGKGEEGSDGDKR 118

Query: 117 KMGLSMSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVHTELPLRPVFXX 176
            M LSMSQK                                    +YV TELP RPV   
Sbjct: 119 NMALSMSQKLTLGYAILVGAGGVMGFLKSGSQKSLLAGGLSSALLFYVFTELPGRPVLAS 178

Query: 177 XXXXXXXXXXXXVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSAH 226
                       VMGSRFKKSGKVFPAGVVSLVS IMTGGYLHGIMRS+H
Sbjct: 179 SVGLGISAALLVVMGSRFKKSGKVFPAGVVSLVSFIMTGGYLHGIMRSSH 228