Miyakogusa Predicted Gene
- Lj4g3v2215580.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2215580.2 tr|B9HCN5|B9HCN5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_819435 PE=4
SV=1,41.48,3e-18,tify,Tify; CCT_2,CO/COL/TOC1, conserved site;
TIFY,Tify; no description,Tify,CUFF.50530.2
(173 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g124360.1 | divergent CCT motif protein | HC | chr4:514339... 206 1e-53
Medtr4g124360.2 | divergent CCT motif protein | HC | chr4:514339... 175 2e-44
Medtr2g044910.1 | divergent CCT motif protein | HC | chr2:195298... 151 3e-37
Medtr2g044910.3 | divergent CCT motif protein | HC | chr2:195306... 147 7e-36
Medtr2g044910.2 | divergent CCT motif protein | HC | chr2:195298... 107 6e-24
Medtr5g013515.1 | jasmonate zim-domain protein | HC | chr5:43008... 61 4e-10
Medtr5g013530.1 | jasmonate zim-domain protein | HC | chr5:43109... 60 1e-09
Medtr5g013530.2 | jasmonate zim-domain protein | HC | chr5:43111... 60 1e-09
Medtr2g042900.1 | jasmonate zim-domain protein | HC | chr2:18686... 57 9e-09
Medtr4g124960.1 | jasmonate zim-domain protein | HC | chr4:51828... 56 2e-08
Medtr5g013520.1 | jasmonate zim-domain protein | HC | chr5:43058... 54 9e-08
Medtr4g124960.2 | jasmonate zim-domain protein | HC | chr4:51828... 53 1e-07
Medtr1g102900.1 | divergent CCT motif protein | HC | chr1:465138... 48 4e-06
Medtr1g102900.3 | divergent CCT motif protein | HC | chr1:465138... 48 4e-06
>Medtr4g124360.1 | divergent CCT motif protein | HC |
chr4:51433963-51431129 | 20130731
Length = 178
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 121/142 (85%), Gaps = 3/142 (2%)
Query: 32 NNLSDEGSVKHFSNNNRPMPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIA 91
N++SD+ SVKHFS N P+ SGLN +TPG TQFAI YNGSM VYDGIPAEKVHEIM++A
Sbjct: 13 NSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMA 72
Query: 92 AA-AKSAEMKSGIPFMSLI-PTSPSSPQGTSNSLASPPSVSFP-AEKSSICRLQEFPIAR 148
+A AKS+EMKSGIPF SL T+PSSPQG S++L SPPSV FP AEKSSICR+QEFP+AR
Sbjct: 73 SANAKSSEMKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLAR 132
Query: 149 RQSLQRFLEKRRMRLGSKNPYT 170
RQSLQRFLEKRR+R+ SK PYT
Sbjct: 133 RQSLQRFLEKRRIRVRSKAPYT 154
>Medtr4g124360.2 | divergent CCT motif protein | HC |
chr4:51433963-51431183 | 20130731
Length = 140
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 102/116 (87%), Gaps = 3/116 (2%)
Query: 58 VTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAA-AKSAEMKSGIPFMSLIP-TSPSS 115
+TPG TQFAI YNGSM VYDGIPAEKVHEIM++A+A AKS+EMKSGIPF SL T+PSS
Sbjct: 1 MTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSTTPSS 60
Query: 116 PQGTSNSLASPPSVSFPA-EKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYT 170
PQG S++L SPPSV FPA EKSSICR+QEFP+ARRQSLQRFLEKRR+R+ SK PYT
Sbjct: 61 PQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYT 116
>Medtr2g044910.1 | divergent CCT motif protein | HC |
chr2:19529873-19533009 | 20130731
Length = 207
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 103/137 (75%), Gaps = 6/137 (4%)
Query: 37 EGSVKHFSNNNRPMPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLI-AAAAK 95
EGS+ + S+ N+ MPASG+N V TQ I+YNGS+ +YDGIPAEKV EIM I AAAAK
Sbjct: 32 EGSMMN-SSANKSMPASGMNPVIANTTQLTIFYNGSICIYDGIPAEKVQEIMRIAAAAAK 90
Query: 96 SAEMKSGI---PFMSLIPTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSL 152
S+E K + P S +PT PSSP GT++++AS ++ FPA KSSICR+QEFPIARR SL
Sbjct: 91 SSETKKIVKQSPAPSPVPTRPSSPHGTADNIASSQALPFPA-KSSICRMQEFPIARRHSL 149
Query: 153 QRFLEKRRMRLGSKNPY 169
Q FL+KRR RLGSK PY
Sbjct: 150 QMFLQKRRDRLGSKAPY 166
>Medtr2g044910.3 | divergent CCT motif protein | HC |
chr2:19530634-19533009 | 20130731
Length = 164
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 96/127 (75%), Gaps = 5/127 (3%)
Query: 50 MPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLI-AAAAKSAEMKSGI---PF 105
MPASG+N V TQ I+YNGS+ +YDGIPAEKV EIM I AAAAKS+E K + P
Sbjct: 1 MPASGMNPVIANTTQLTIFYNGSICIYDGIPAEKVQEIMRIAAAAAKSSETKKIVKQSPA 60
Query: 106 MSLIPTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGS 165
S +PT PSSP GT++++AS ++ FPA KSSICR+QEFPIARR SLQ FL+KRR RLGS
Sbjct: 61 PSPVPTRPSSPHGTADNIASSQALPFPA-KSSICRMQEFPIARRHSLQMFLQKRRDRLGS 119
Query: 166 KNPYTTT 172
K PY ++
Sbjct: 120 KAPYPSS 126
>Medtr2g044910.2 | divergent CCT motif protein | HC |
chr2:19529873-19533009 | 20130731
Length = 164
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 88/134 (65%), Gaps = 8/134 (5%)
Query: 37 EGSVKHFSNNNRPMPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLI-AAAAK 95
EGS+ + S+ N+ MPASG+N V TQ I+YNGS+ +YDGIPAEKV EIM I AAAAK
Sbjct: 32 EGSMMN-SSANKSMPASGMNPVIANTTQLTIFYNGSICIYDGIPAEKVQEIMRIAAAAAK 90
Query: 96 SAEMKSGI---PFMSLIPTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQ--EFPIARRQ 150
S+E K + P S +PT PSSP GT++++AS ++ FPA KSSICR+Q FPI +
Sbjct: 91 SSETKKIVKQSPAPSPVPTRPSSPHGTADNIASSQALPFPA-KSSICRMQGVNFPINFLR 149
Query: 151 SLQRFLEKRRMRLG 164
L R+ +
Sbjct: 150 LFSNCLNLYRLLIA 163
>Medtr5g013515.1 | jasmonate zim-domain protein | HC |
chr5:4300830-4301739 | 20130731
Length = 140
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 60 PGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAA--AAKSAEMKSGIPFMSLIPTSPS--S 115
P TQ I+Y+G + V+D IPAEKV +IM+ ++ S K+ + PS +
Sbjct: 10 PKCTQMTIFYDGKIIVFDDIPAEKVEDIMVFSSEGTTTSRNHKNNNYAFRFAQSHPSFLA 69
Query: 116 PQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTT 172
+NS+ P S P + + P+ R+ SL RFLEKR+ R+ +K PY T+
Sbjct: 70 RNSANNSVQVPSS---PV-------IYDLPMTRKASLHRFLEKRKDRIAAKAPYQTS 116
>Medtr5g013530.1 | jasmonate zim-domain protein | HC |
chr5:4310978-4312243 | 20130731
Length = 173
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 60 PGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAA---AAKSAEMKSGIPFMSLIPTSPSSP 116
P Q I+Y+G + V+D +PA+K +IM + A+ S + + S +
Sbjct: 40 PSCAQMTIFYDGKVIVFDDVPADKAKDIMDFSTKGIASTSQNHNNNYAYSSFL------- 92
Query: 117 QGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTT 172
+ NSL P V SI + + P+ R+ SL RFLEKR+ R+ +K PY T+
Sbjct: 93 --SRNSLQDYPQVP------SIPVIYDLPMTRKASLHRFLEKRKDRIAAKAPYQTS 140
>Medtr5g013530.2 | jasmonate zim-domain protein | HC |
chr5:4311173-4312058 | 20130731
Length = 151
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 60 PGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAA---AAKSAEMKSGIPFMSLIPTSPSSP 116
P Q I+Y+G + V+D +PA+K +IM + A+ S + + S +
Sbjct: 18 PSCAQMTIFYDGKVIVFDDVPADKAKDIMDFSTKGIASTSQNHNNNYAYSSFL------- 70
Query: 117 QGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTT 172
+ NSL P V SI + + P+ R+ SL RFLEKR+ R+ +K PY T+
Sbjct: 71 --SRNSLQDYPQVP------SIPVIYDLPMTRKASLHRFLEKRKDRIAAKAPYQTS 118
>Medtr2g042900.1 | jasmonate zim-domain protein | HC |
chr2:18686325-18688824 | 20130731
Length = 253
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 30 VQNNLSDEGSVKHFSNNNRPMPASGLN----VVTPGRTQFAIYYNGSMHVYDGIPAEKVH 85
++NNLS K+ + + P + LN + P Q ++YNG + V+D PA+K
Sbjct: 78 MENNLSQ----KNLTTMDLLTPQAALNNSNAIKGPKAAQLTMFYNGQVIVFDDFPADKAQ 133
Query: 86 EIMLIAAAAKSAEMKSGI-PFMSLIPTSPSSPQGTSNSLASP--PSVS-FPAEKSSICRL 141
E+M A S + + + P+ P + TS + +P P+V+ P+ + +
Sbjct: 134 ELMAFANKGISQSQNNSVYTYTQSQPSFPPNLVRTSVNTTTPIVPTVNIIPSTATGTGSM 193
Query: 142 QE------------FPIARRQSLQRFLEKRRMRLGSKNPY 169
E PI R+ SL RFLEKR+ R+ + PY
Sbjct: 194 NEHLQVPSRPNLCDLPIMRKASLHRFLEKRKDRIAANAPY 233
>Medtr4g124960.1 | jasmonate zim-domain protein | HC |
chr4:51828988-51826800 | 20130731
Length = 203
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 30/113 (26%)
Query: 57 VVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSAEMKSGIPFMSLIPTSPSSP 116
V P Q ++YNG + V D PAEKV E+ + A++ S +P ++IP P S
Sbjct: 94 VKEPETAQLTMFYNGQVIVLDDFPAEKVEEL---KSFARTQTQHSDVP--TMIPQQPPS- 147
Query: 117 QGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPY 169
L + PIAR+ SL+RF+EKR+ R+ +PY
Sbjct: 148 ------------------------LIDMPIARKASLRRFMEKRKDRVSVYSPY 176
>Medtr5g013520.1 | jasmonate zim-domain protein | HC |
chr5:4305887-4307508 | 20130731
Length = 146
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 60 PGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAA---AAKSAEMKSGIPFMSLIPTSPSSP 116
P Q I Y+G + V+D +PA+K +IM + + S + + S +
Sbjct: 11 PKCAQMTILYDGKVIVFDDVPADKAKDIMDFSTKGITSTSQHHNNNYAYSSFL------- 63
Query: 117 QGTSNSLASPPSV-SFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTT 172
NSL V S PA + + P+ R+ SL RFLEKR+ R+ +K PY T+
Sbjct: 64 --ARNSLQDCYQVPSIPA-------IYDLPMTRKASLHRFLEKRKDRIAAKAPYQTS 111
>Medtr4g124960.2 | jasmonate zim-domain protein | HC |
chr4:51828971-51827278 | 20130731
Length = 175
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 57 VVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSAEMKSGIPFMSLIPTSPSSP 116
V P Q ++YNG + V D PAEKV E + + A++ S +P ++IP P S
Sbjct: 94 VKEPETAQLTMFYNGQVIVLDDFPAEKVEE---LKSFARTQTQHSDVP--TMIPQQPPS- 147
Query: 117 QGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSK 166
L + PIAR+ SL+RF+EKR+ R S+
Sbjct: 148 ------------------------LIDMPIARKASLRRFMEKRKDRYASQ 173
>Medtr1g102900.1 | divergent CCT motif protein | HC |
chr1:46513826-46507169 | 20130731
Length = 328
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 48 RPMPASGLNVVT-PGRT-------QFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSA-- 97
RP + NVV PG Q I+Y G ++VYDG+ +K IM +AAA S+
Sbjct: 117 RPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAAACPSSFP 176
Query: 98 ----EMKSGIPFMS----------LIPTSPSSPQGTSNSLASPPSVSFPA---EKSSICR 140
K+ + S L PT + Q V +P EK S R
Sbjct: 177 QDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKM----VEYPLQYREKGSTAR 232
Query: 141 LQEFPIARRQSLQRFLEKRRMRLGSKNPYTT 171
E +R+ SLQR+LEKR+ R SK T
Sbjct: 233 DAEGQASRKVSLQRYLEKRKDRGRSKGKKLT 263
>Medtr1g102900.3 | divergent CCT motif protein | HC |
chr1:46513826-46507169 | 20130731
Length = 330
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 48 RPMPASGLNVVT-PGRT-------QFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSA-- 97
RP + NVV PG Q I+Y G ++VYDG+ +K IM +AAA S+
Sbjct: 117 RPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAAACPSSFP 176
Query: 98 ----EMKSGIPFMS----------LIPTSPSSPQGTSNSLASPPSVSFPA---EKSSICR 140
K+ + S L PT + Q V +P EK S R
Sbjct: 177 QDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKM----VEYPLQYREKGSTAR 232
Query: 141 LQEFPIARRQSLQRFLEKRRMRLGSKNPYTT 171
E +R+ SLQR+LEKR+ R SK T
Sbjct: 233 DAEGQASRKVSLQRYLEKRKDRGRSKGKKLT 263