Miyakogusa Predicted Gene

Lj4g3v2215050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215050.1 Non Characterized Hit- tr|I1MS46|I1MS46_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,52.38,1e-16,
,CUFF.50484.1
         (86 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g124770.1 | transmembrane protein, putative | HC | chr4:51...   118   1e-27

>Medtr4g124770.1 | transmembrane protein, putative | HC |
          chr4:51716087-51715181 | 20130731
          Length = 79

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 69/86 (80%), Gaps = 7/86 (8%)

Query: 1  MEGAAGKAVVKVSGDLRTPSSLSFGNSHGRAHDSSLVLATRPSRQALSYWTCSKLCAICF 60
          M+GA  K VVKVSGD +T SS +       ++DSS VLATRPSRQ LSYWTCSKLCAICF
Sbjct: 1  MDGAV-KTVVKVSGDHKTSSSTT------PSYDSSYVLATRPSRQVLSYWTCSKLCAICF 53

Query: 61 VAGVVFGYTLRGRVKRWASKILRKLS 86
          V GV+FGYTLRGRVKRWASKIL KL+
Sbjct: 54 VGGVIFGYTLRGRVKRWASKILNKLT 79