Miyakogusa Predicted Gene

Lj4g3v2214790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2214790.1 Non Characterized Hit- tr|D8TRX1|D8TRX1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,47.42,0.000000000000009,Cpn10,Chaperonin Cpn10; no
description,Chaperonin Cpn10; CHAPERONINS_CPN10,Chaperonin Cpn10,
conserv,CUFF.50462.1
         (240 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g124910.1 | GroES chaperonin | HC | chr4:51805326-51802639...   385   e-107
Medtr4g124910.2 | GroES chaperonin | HC | chr4:51805230-51802749...   385   e-107
Medtr2g043230.1 | GroES chaperonin | HC | chr2:18824191-18827678...   382   e-106
Medtr8g009280.1 | GroES chaperonin | HC | chr8:2101157-2105141 |...    57   1e-08
Medtr3g110030.1 | GroES chaperonin | HC | chr3:50896835-50897680...    54   1e-07
Medtr7g089300.1 | GroES chaperonin | HC | chr7:34927547-34924612...    54   2e-07

>Medtr4g124910.1 | GroES chaperonin | HC | chr4:51805326-51802639 |
           20130731
          Length = 253

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/240 (80%), Positives = 215/240 (89%), Gaps = 1/240 (0%)

Query: 1   MATSQFTASSISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAPKH 60
           MAT+Q TASSIS RNL S E LR S++QF      RIA  TQ   PS+VVKAATVVAPKH
Sbjct: 1   MATTQLTASSISTRNLSSFERLRTSSIQFPR-NNARIAILTQWSLPSMVVKAATVVAPKH 59

Query: 61  TAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISVKT 120
           T +KPLGDRVLVKIK+AEEKT GGILLPSTAQSKPQGGEVVA+G+GK++G NKVDISVK 
Sbjct: 60  TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVKA 119

Query: 121 GAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEKTA 180
           GA+VVYSKYAGTEVEF+GSKHLILKD+DIVGILET+EV+DLKPLNDRVLIKVA AEEKTA
Sbjct: 120 GAQVVYSKYAGTEVEFDGSKHLILKDEDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTA 179

Query: 181 GGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDGSE 240
           GGLLLTEATK+KPSIGTVIA GPG +D+EGNRKPLS+ PG+TVLYSKYAGNDFKGKDGS+
Sbjct: 180 GGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSILPGNTVLYSKYAGNDFKGKDGSD 239


>Medtr4g124910.2 | GroES chaperonin | HC | chr4:51805230-51802749 |
           20130731
          Length = 253

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/240 (80%), Positives = 215/240 (89%), Gaps = 1/240 (0%)

Query: 1   MATSQFTASSISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAPKH 60
           MAT+Q TASSIS RNL S E LR S++QF      RIA  TQ   PS+VVKAATVVAPKH
Sbjct: 1   MATTQLTASSISTRNLSSFERLRTSSIQFPR-NNARIAILTQWSLPSMVVKAATVVAPKH 59

Query: 61  TAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISVKT 120
           T +KPLGDRVLVKIK+AEEKT GGILLPSTAQSKPQGGEVVA+G+GK++G NKVDISVK 
Sbjct: 60  TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVKA 119

Query: 121 GAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEKTA 180
           GA+VVYSKYAGTEVEF+GSKHLILKD+DIVGILET+EV+DLKPLNDRVLIKVA AEEKTA
Sbjct: 120 GAQVVYSKYAGTEVEFDGSKHLILKDEDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTA 179

Query: 181 GGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDGSE 240
           GGLLLTEATK+KPSIGTVIA GPG +D+EGNRKPLS+ PG+TVLYSKYAGNDFKGKDGS+
Sbjct: 180 GGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSILPGNTVLYSKYAGNDFKGKDGSD 239


>Medtr2g043230.1 | GroES chaperonin | HC | chr2:18824191-18827678 |
           20130731
          Length = 254

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 213/240 (88%)

Query: 1   MATSQFTASSISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAPKH 60
           MA+SQ TASSIS R++ S EGLRPS++QFH    VRI  P ++ F +L+VKAATVVAPK+
Sbjct: 1   MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKY 60

Query: 61  TAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISVKT 120
           TAIKPLGDRVLVKIKEAEEKT  GILLPS+AQ+KPQGGEVVAVGEGK++G N+V+ISVK 
Sbjct: 61  TAIKPLGDRVLVKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKP 120

Query: 121 GAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEKTA 180
           GA+VVYSKYAGTEV+FNG KHLILKDDDIVGILETD+++DLKPLNDRVLIK+  AEEKT+
Sbjct: 121 GAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTS 180

Query: 181 GGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDGSE 240
           GGL LTEATKEKPS GTV+A GPG +DEEGNRKPL+V  G+TVLYSKYAGNDFKGKDG E
Sbjct: 181 GGLYLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVASGNTVLYSKYAGNDFKGKDGFE 240


>Medtr8g009280.1 | GroES chaperonin | HC | chr8:2101157-2105141 |
           20130731
          Length = 135

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 21/114 (18%)

Query: 42  QKWFPSLVVKAATVVAPKHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVV 101
           +KW PS VV              P  DRVL++++E  EKT GGILLP +A       E  
Sbjct: 42  KKWEPSKVV--------------PQADRVLIRLEELSEKTAGGILLPKSAVK----FERY 83

Query: 102 AVGEGKSIGNNKVDISVKTGAKVVYSKYAGTEVEF-NGSKHLILKDDDIVGILE 154
            VGE  ++G    +  VK G+KV+++     EV+    +KH  +K  D++ ++E
Sbjct: 84  LVGEVLNVGAEAEN--VKAGSKVLFTDINAYEVDLGTDAKHCFIKSSDLLAVVE 135


>Medtr3g110030.1 | GroES chaperonin | HC | chr3:50896835-50897680 |
           20130731
          Length = 97

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 65  PLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEG-KSIGNNKVDISVKTGAK 123
           P  +R+LV+      KT  GILLP    S+   G+VVAVG G +    N + +SVK G  
Sbjct: 7   PTFNRILVEKIIPPSKTSAGILLPEKT-SQLNSGKVVAVGPGSRDKSGNLIPVSVKEGDH 65

Query: 124 VVYSKYAGTEVEFNGSKHLILKDDDIVGILE 154
           V+  +Y G++++ +  +  + +D+DI+GIL 
Sbjct: 66  VLLPEYGGSQIKLDDKEFHLFRDEDILGILR 96



 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 161 LKPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPG 220
           L P  +R+L++      KT+ G+LL E T +  S G V+A GPG+ D+ GN  P+SV  G
Sbjct: 5   LIPTFNRILVEKIIPPSKTSAGILLPEKTSQLNS-GKVVAVGPGSRDKSGNLIPVSVKEG 63

Query: 221 STVLYSKYAGNDFKGKD 237
             VL  +Y G+  K  D
Sbjct: 64  DHVLLPEYGGSQIKLDD 80


>Medtr7g089300.1 | GroES chaperonin | HC | chr7:34927547-34924612 |
           20130731
          Length = 97

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 65  PLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKV-DISVKTGAK 123
           PL +RVLV+      KT  GILLP    SK   G+VVAVG G    + K+  ++VK G  
Sbjct: 7   PLFNRVLVEKIVPPSKTTAGILLPEKI-SKLNSGKVVAVGPGVHGKDGKLLPVAVKEGDT 65

Query: 124 VVYSKYAGTEVEFNGSKHLILKDDDIVGILE 154
           V+  +Y G EV+ +  ++ +  DDDI+G L 
Sbjct: 66  VLLPEYGGVEVKLDHKEYYLYGDDDILGTLH 96