Miyakogusa Predicted Gene
- Lj4g3v2191490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2191490.1 Non Characterized Hit- tr|C6TAS3|C6TAS3_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,49.15,7e-18,RNI-like,NULL; GB DEF: HYPOTHETICAL PROTEIN
AT2G06040,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL;
,gene.Ljchr4_pseudomol_20120830.path1.gene6060.1
(218 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g125440.1 | RNI superfamily protein | HC | chr4:52012520-5... 231 3e-61
Medtr4g125410.1 | RNI superfamily protein | HC | chr4:51999330-5... 222 3e-58
Medtr2g041610.1 | Rad7, putative | HC | chr2:18268218-18274145 |... 212 2e-55
Medtr4g125390.1 | Rad7, putative | LC | chr4:51987742-51990659 |... 125 3e-29
Medtr4g125440.2 | RNI superfamily protein | HC | chr4:52012499-5... 100 9e-22
Medtr2g041610.2 | Rad7, putative | HC | chr2:18268218-18274145 |... 87 1e-17
Medtr1g029500.1 | F-box SKP2A-like protein | HC | chr1:10133328-... 57 2e-08
Medtr1g054625.1 | F-box/LRR protein | HC | chr1:23749689-2374406... 54 8e-08
Medtr1g054625.2 | F-box/LRR protein | HC | chr1:23749689-2374405... 54 9e-08
Medtr3g088895.2 | F-box SKP2A-like protein | HC | chr3:40692425-... 54 1e-07
Medtr3g088895.1 | F-box SKP2A-like protein | HC | chr3:40692425-... 54 1e-07
Medtr1g114610.1 | F-box/LRR protein | HC | chr1:51737951-5174122... 53 2e-07
>Medtr4g125440.1 | RNI superfamily protein | HC |
chr4:52012520-52008004 | 20130731
Length = 691
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/212 (59%), Positives = 144/212 (67%), Gaps = 37/212 (17%)
Query: 4 NLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSIT 63
NLT+AS++ IA CPGLQALDL NL KLTDL+I YLTNSC+ LRTL L RNPF
Sbjct: 516 NLTDASMKVIATHCPGLQALDLMNLYKLTDLTIGYLTNSCRALRTLNLCRNPF------- 568
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVGQH 123
DEAIA+FLE+ G SLEELSLNNIKKVGQ
Sbjct: 569 ------------------------------SDEAIAAFLELTGKSLEELSLNNIKKVGQQ 598
Query: 124 TAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGYSNP 183
T +SLA +A+ LHTLDLSWCRN++D E GLIVDSC SL+ LKLFGCSQVT +FLNG+SN
Sbjct: 599 TTLSLANNAKKLHTLDLSWCRNLTDNEFGLIVDSCLSLRSLKLFGCSQVTDVFLNGHSNL 658
Query: 184 KIQIIGVKLTLLFQHIEVLERPQGALRYSSVS 215
+IQIIG+KL L QHI+ QGALRYSS S
Sbjct: 659 EIQIIGLKLCPLLQHIKEPNPNQGALRYSSAS 690
>Medtr4g125410.1 | RNI superfamily protein | HC |
chr4:51999330-51995956 | 20130731
Length = 455
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/212 (57%), Positives = 142/212 (66%), Gaps = 37/212 (17%)
Query: 4 NLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSIT 63
NLT+AS++ IAE CP L ALD+TNLCKLTDL+I YL NSC+ L LKL RN F
Sbjct: 280 NLTDASMKFIAEHCPELHALDITNLCKLTDLTIRYLANSCRALLNLKLCRNSFS------ 333
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVGQH 123
DEAIA+FLEI G SLEELSLNNIKKVGQ
Sbjct: 334 -------------------------------DEAIAAFLEINGKSLEELSLNNIKKVGQQ 362
Query: 124 TAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGYSNP 183
T++SLA +A+NLHTLDLSWCRN++D E GLIVDSC SL+ LKLFGCSQVT+ FL G+SN
Sbjct: 363 TSLSLAKNAKNLHTLDLSWCRNLTDNEFGLIVDSCSSLRFLKLFGCSQVTNAFLKGHSNS 422
Query: 184 KIQIIGVKLTLLFQHIEVLERPQGALRYSSVS 215
++QIIG+KL L QHI+ Q LRYSSVS
Sbjct: 423 ELQIIGLKLCPLLQHIKEPNPHQSVLRYSSVS 454
>Medtr2g041610.1 | Rad7, putative | HC | chr2:18268218-18274145 |
20130731
Length = 700
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 142/214 (66%), Gaps = 37/214 (17%)
Query: 4 NLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSIT 63
NLT+AS++ +AE CPG+ LDL N+CKLTDLS+ YLTN C+ L TLKL RN F
Sbjct: 521 NLTDASIKVVAEHCPGICRLDLMNVCKLTDLSMGYLTNGCRALHTLKLCRNTF------- 573
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVGQH 123
DEAIA+F+E G SL +LSLNNIKKVG H
Sbjct: 574 ------------------------------SDEAIAAFVETNGESLIDLSLNNIKKVGYH 603
Query: 124 TAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGYSNP 183
T +SLA HA+ LH+LD+SWCR ++D LGLIVDSC SL+LLKLFGC+Q+T +FL G+SN
Sbjct: 604 TTLSLASHAKKLHSLDVSWCRTLTDNALGLIVDSCLSLRLLKLFGCTQLTDVFLKGHSNS 663
Query: 184 KIQIIGVKLTLLFQHIEVLERPQGALRYSSVSFN 217
+IQ+IG+K+T + QH++V + Q AL YSSVS +
Sbjct: 664 QIQLIGLKMTSVLQHVKVPDPHQSALNYSSVSVD 697
>Medtr4g125390.1 | Rad7, putative | LC | chr4:51987742-51990659 |
20130731
Length = 376
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 94 CDEAIASFLEIIGGSLEELSLNNIKKVGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGL 153
CDEAIA+F EI G SL+ELSL N+K VGQ T +S A ARNLHTLDLSW +N++D E GL
Sbjct: 282 CDEAIAAFFEIKGKSLKELSLCNLK-VGQQTTLSFANKARNLHTLDLSWRQNLTDNEFGL 340
Query: 154 IVDSCFSLKLLKLFGCSQVTSIFLNGYSNPKIQII 188
IVDSC SL+ LKL GC QVT++FL G+SN ++QII
Sbjct: 341 IVDSCLSLRFLKLLGCLQVTNVFLKGHSNSELQII 375
>Medtr4g125440.2 | RNI superfamily protein | HC |
chr4:52012499-52008006 | 20130731
Length = 607
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 67/116 (57%), Gaps = 37/116 (31%)
Query: 4 NLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSIT 63
NLT+AS++ IA CPGLQALDL NL KLTDL+I YLTNSC+ LRTL L RNPF
Sbjct: 516 NLTDASMKVIATHCPGLQALDLMNLYKLTDLTIGYLTNSCRALRTLNLCRNPF------- 568
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKK 119
DEAIA+FLE+ G SLEELSLNNIKK
Sbjct: 569 ------------------------------SDEAIAAFLELTGKSLEELSLNNIKK 594
>Medtr2g041610.2 | Rad7, putative | HC | chr2:18268218-18274145 |
20130731
Length = 614
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 64/117 (54%), Gaps = 37/117 (31%)
Query: 4 NLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSIT 63
NLT+AS++ +AE CPG+ LDL N+CKLTDLS+ YLTN C+ L TLKL RN F
Sbjct: 521 NLTDASIKVVAEHCPGICRLDLMNVCKLTDLSMGYLTNGCRALHTLKLCRNTF------- 573
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKV 120
DEAIA+F+E G SL +LSLNNIKKV
Sbjct: 574 ------------------------------SDEAIAAFVETNGESLIDLSLNNIKKV 600
>Medtr1g029500.1 | F-box SKP2A-like protein | HC |
chr1:10133328-10130817 | 20130731
Length = 352
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSITL 64
L + +V+A+A+ C LQ LDL+ KLTD S+ + C +L L + C S
Sbjct: 102 LEDNAVEAVAQFCRDLQILDLSKSFKLTDRSLYAIALGCSDLTKLNISG----CSS---- 153
Query: 65 LFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIA-SFLEIIG---GSLEELSLNNIKKV 120
F+ L SL + L L GC +A++ + L+ IG L+ L+L ++V
Sbjct: 154 -FSDKALSYLASLCRKLKIL-----NLCGCVKAVSDTALQAIGHHCNQLQSLNLGWCEQV 207
Query: 121 GQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGY 180
+SLA+ +L TLDL C ++D+ + + D C LK L L+ C +T +
Sbjct: 208 SDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALADRCPHLKSLGLYYCKNITDRAMYSL 267
Query: 181 SNPKI 185
+ K+
Sbjct: 268 AQSKV 272
>Medtr1g054625.1 | F-box/LRR protein | HC | chr1:23749689-23744064 |
20130731
Length = 351
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 41/172 (23%)
Query: 3 RNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSI 62
+N+++ VQ +A+ P L++L+LT KLTD ++ L C L++L L +SS
Sbjct: 172 KNISDRGVQLVADNYPKLESLNLTRCVKLTDAGLKELLQKCLSLQSLNL-----YAVSSF 226
Query: 63 TLLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGG-SLEELSLNNIKKVG 121
T R +C L + +FL++ G +L + L +I K
Sbjct: 227 TDEAYRK----ICLLTRL-------------------TFLDLCGAQNLSDQGLQSISK-- 261
Query: 122 QHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVT 173
+NL +L+L+WC V+DE + I SC SL+ L LFG VT
Sbjct: 262 ----------CKNLVSLNLTWCVRVTDEGVIAIAQSCTSLEFLSLFGIVGVT 303
>Medtr1g054625.2 | F-box/LRR protein | HC | chr1:23749689-23744056 |
20130731
Length = 254
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 41/172 (23%)
Query: 3 RNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSI 62
+N+++ VQ +A+ P L++L+LT KLTD ++ L C L++L L +SS
Sbjct: 75 KNISDRGVQLVADNYPKLESLNLTRCVKLTDAGLKELLQKCLSLQSLNL-----YAVSSF 129
Query: 63 TLLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGG-SLEELSLNNIKKVG 121
T R +C L + +FL++ G +L + L +I K
Sbjct: 130 TDEAYRK----ICLLTRL-------------------TFLDLCGAQNLSDQGLQSISK-- 164
Query: 122 QHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVT 173
+NL +L+L+WC V+DE + I SC SL+ L LFG VT
Sbjct: 165 ----------CKNLVSLNLTWCVRVTDEGVIAIAQSCTSLEFLSLFGIVGVT 206
>Medtr3g088895.2 | F-box SKP2A-like protein | HC |
chr3:40692425-40696084 | 20130731
Length = 368
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSITL 64
L + V IA C LQ LDL+ KLTD S+ + + C++L L +I+
Sbjct: 115 LDDNVVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKL-----------NISG 163
Query: 65 LFARDDDMLLCSLQEMMTYLWEFLGFLT-----GCDEAIA-SFLEIIG---GSLEELSLN 115
A D+ L YL F L GC A + + L+ IG L+ L+L
Sbjct: 164 CSAFSDNAL--------AYLAGFCRKLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLG 215
Query: 116 NIKKVGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSI 175
KVG +SLA+ +L T+DL C ++D+ + + + C L+ L L+ C +T
Sbjct: 216 WCDKVGDVGVMSLAYGCPDLRTVDLCGCVYITDDSVIALANGCPHLRSLGLYFCKNITDN 275
Query: 176 FLNGYSNPKIQ 186
+ + K++
Sbjct: 276 AMYSLAQSKVK 286
>Medtr3g088895.1 | F-box SKP2A-like protein | HC |
chr3:40692425-40696084 | 20130731
Length = 368
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSITL 64
L + V IA C LQ LDL+ KLTD S+ + + C++L L +I+
Sbjct: 115 LDDNVVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKL-----------NISG 163
Query: 65 LFARDDDMLLCSLQEMMTYLWEFLGFLT-----GCDEAIA-SFLEIIG---GSLEELSLN 115
A D+ L YL F L GC A + + L+ IG L+ L+L
Sbjct: 164 CSAFSDNAL--------AYLAGFCRKLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLG 215
Query: 116 NIKKVGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSI 175
KVG +SLA+ +L T+DL C ++D+ + + + C L+ L L+ C +T
Sbjct: 216 WCDKVGDVGVMSLAYGCPDLRTVDLCGCVYITDDSVIALANGCPHLRSLGLYFCKNITDN 275
Query: 176 FLNGYSNPKIQ 186
+ + K++
Sbjct: 276 AMYSLAQSKVK 286
>Medtr1g114610.1 | F-box/LRR protein | HC | chr1:51737951-51741223 |
20130731
Length = 416
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 58/251 (23%)
Query: 3 RNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSI 62
R LT+ + A+A+ C L+ L LT +TD +E L+ +C+ L L L + +SI
Sbjct: 145 RKLTDKGLSAVAKGCCDLRILHLTGCRFVTDSILEALSKNCRNLEELVL-----QGCTSI 199
Query: 63 TLLFARDDDML-LCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVG 121
T D+ ++ L S + + +L + T D ++S SL+ L L + ++G
Sbjct: 200 T-----DNGLMSLASGCQRIKFL-DINKCSTVSDVGVSSICNACSSSLKTLKLLDCYRIG 253
Query: 122 QHTAVSLAWHARNLHTLD---------------------------LSWCRNVSDEELGLI 154
+ +SLA NL TL + WC NVSD L I
Sbjct: 254 DKSILSLAKFCDNLETLIIGGCRDVSNDAIKLLATACRNKLKNLRMDWCLNVSDSSLSCI 313
Query: 155 VDSCFSLKLLKLFGCSQVTSIFLNGYSN---------------PKIQIIGVKLTL----L 195
+ C +L+ L + C +VT + SN PKI ++G+ + L
Sbjct: 314 LSQCRNLEALDIGCCEEVTDTAFHHISNEEPGLSLKILKVSNCPKITVVGIGILLGKCSY 373
Query: 196 FQHIEVLERPQ 206
++++V P
Sbjct: 374 LEYLDVRSCPH 384