Miyakogusa Predicted Gene

Lj4g3v2180380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2180380.1 Non Characterized Hit- tr|Q8S8F0|Q8S8F0_ARATH
Putative uncharacterized protein At2g28020
OS=Arabidop,59.09,0.000000000000003,Med20,Mediator complex, subunit
Med20; SUBFAMILY NOT NAMED,NULL; UBIQUITIN SPECIFIC PROTEASE
HOMOLOG,CUFF.50440.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g125510.1 | mediator of RNA polymerase II transcription su...   395   e-110
Medtr2g063927.1 | mediator of RNA polymerase II transcription su...   379   e-105

>Medtr4g125510.1 | mediator of RNA polymerase II transcription
           subunit 20b | HC | chr4:52061897-52066670 | 20130731
          Length = 218

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/218 (86%), Positives = 201/218 (92%)

Query: 1   MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60
           MP+RWILHWQP QG VVNSH LNEISQCVEN+NGVKDGR K+TLTFYRPNLRDQS++++F
Sbjct: 1   MPVRWILHWQPSQGAVVNSHILNEISQCVENLNGVKDGRTKATLTFYRPNLRDQSLSSEF 60

Query: 61  PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120
           PRDFLGISLMEQP KYYFIIRGHK+ VEADSSILTIMEKLQSYKSKV LNFEG QYKLGD
Sbjct: 61  PRDFLGISLMEQPNKYYFIIRGHKLAVEADSSILTIMEKLQSYKSKVTLNFEGTQYKLGD 120

Query: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKSRPIMEEFIEIWREVLSKKSLPGHFMR 180
           FQ+R+IKVVPNQAENLRGILMEIEYLP SSVEK +PIMEEFIEIWR+VLSKKSLPG FMR
Sbjct: 121 FQVRMIKVVPNQAENLRGILMEIEYLPNSSVEKVKPIMEEFIEIWRDVLSKKSLPGQFMR 180

Query: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQLRN 218
            EP F EYGL D YT QHTAVQYAAALAQLIASVQ+RN
Sbjct: 181 TEPIFVEYGLSDHYTWQHTAVQYAAALAQLIASVQVRN 218


>Medtr2g063927.1 | mediator of RNA polymerase II transcription
           subunit 20b | HC | chr2:27098648-27099304 | 20130731
          Length = 218

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 196/218 (89%)

Query: 1   MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60
           MP+RWILHWQP QGT VNSH LNEISQCVEN NGVKDGR K+T+TFY+PNL+DQS++  F
Sbjct: 1   MPVRWILHWQPSQGTTVNSHILNEISQCVENFNGVKDGRCKTTITFYKPNLKDQSMSAQF 60

Query: 61  PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120
           PRDFLGISLMEQP KYY IIR +K+V EADSSILTIMEKLQSYKSKVALN EG+QY LGD
Sbjct: 61  PRDFLGISLMEQPNKYYLIIRDNKLVAEADSSILTIMEKLQSYKSKVALNCEGLQYNLGD 120

Query: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKSRPIMEEFIEIWREVLSKKSLPGHFMR 180
           FQ+R+IKVVPNQAE+LRGILMEIEYLPISS+E ++PIMEEFIEIWREVLSKKSLPG FMR
Sbjct: 121 FQMRLIKVVPNQAESLRGILMEIEYLPISSLENAKPIMEEFIEIWREVLSKKSLPGQFMR 180

Query: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQLRN 218
           AEP F +YGL D Y+ QHTAVQYAAAL QL ASVQLR+
Sbjct: 181 AEPIFADYGLSDNYSLQHTAVQYAAALPQLFASVQLRS 218