Miyakogusa Predicted Gene

Lj4g3v2172560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2172560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,79.43,0,RECA,DNA recombination
and repair protein RecA; RecA,DNA recombination and repair protein
RecA; RECA,CUFF.50383.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g126040.1 | DNA repair protein RecA, putative | HC | chr4:...   414   e-116
Medtr2g039670.1 | DNA repair and recombination protein | HC | ch...   366   e-101
Medtr7g090880.1 | DNA repair protein RecA, putative | HC | chr7:...   185   5e-47
Medtr8g461220.1 | DNA repair and recombination protein | HC | ch...   164   6e-41
Medtr7g090860.1 | RecA-like protein | LC | chr7:35800572-3579613...    69   5e-12

>Medtr4g126040.1 | DNA repair protein RecA, putative | HC |
           chr4:52380345-52386177 | 20130731
          Length = 417

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/281 (75%), Positives = 222/281 (79%), Gaps = 2/281 (0%)

Query: 9   HAGYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 68
             GYC FVDAEHALD+TLAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG         
Sbjct: 138 QGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDS 197

Query: 69  XXXXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGF 128
                PKGELDGEMGDAHMAMQARLMSQA               IFINQVRSKISTFGGF
Sbjct: 198 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGF 257

Query: 129 GGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFEL 188
           GGPTEVTCGGNALKFYASVRLNIKRIGF+KKGEE++GSQV+VKVVKNKLAPPFKTAEFEL
Sbjct: 258 GGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEEVVGSQVLVKVVKNKLAPPFKTAEFEL 317

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTAXXXXXXXX 248
           QFGKGI R+AEIIKLSLKYK ITKAGSMYYYNE +FRG DALK FLAEN +A        
Sbjct: 318 QFGKGICREAEIIKLSLKYKFITKAGSMYYYNEHNFRGVDALKSFLAENYSALEELEMKI 377

Query: 249 XXXXXNPETEKVPESDSGEVLEEIATLD-STDEETAVVVEA 288
                 PET+K+PESD G+V EEIATLD STDEE   VVEA
Sbjct: 378 REKLLKPETDKLPESD-GDVTEEIATLDSSTDEEAIAVVEA 417


>Medtr2g039670.1 | DNA repair and recombination protein | HC |
           chr2:17387359-17378929 | 20130731
          Length = 424

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/282 (67%), Positives = 209/282 (74%), Gaps = 3/282 (1%)

Query: 9   HAGYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 68
             GYCAF+DAEHALD++LAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG         
Sbjct: 144 QGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDS 203

Query: 69  XXXXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGF 128
                PKGELDGEMGDAHMAMQARLMSQA               IFINQVRSKISTFGGF
Sbjct: 204 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGF 263

Query: 129 GGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFEL 188
           GGPTEVTCGGNALKFY+SVRLNIKR+GFVKKGEE +GSQV+VKVVKNK APPFKTA+FEL
Sbjct: 264 GGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETVGSQVLVKVVKNKHAPPFKTAQFEL 323

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTAXXXXXXXX 248
           +FGKGI R+AEII+LS+K+K I K+GS Y YN +++ G DALK  L  N           
Sbjct: 324 EFGKGICREAEIIELSIKHKFIKKSGSFYEYNGKNYHGKDALKSHLI-NGDGLQDLTTKL 382

Query: 249 XXXXXNPETEKVPESDS--GEVLEEIATLDSTDEETAVVVEA 288
                N ETE V ES    G+V EE+ + DSTDEETAVV EA
Sbjct: 383 REKLLNAETETVSESQEMVGDVTEEMLSPDSTDEETAVVAEA 424


>Medtr7g090880.1 | DNA repair protein RecA, putative | HC |
           chr7:35807573-35802538 | 20130731
          Length = 391

 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 137/229 (59%), Gaps = 3/229 (1%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           GYCA++D E ALD +L ES+GVNT NLL+S PDC E  LS+VDTL +SG           
Sbjct: 148 GYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVDTLTKSGAVDVIVVDSVA 207

Query: 71  XXXPKGELDGEMGDA-HMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFG 129
              PK ELD ++G A    + +R+M+QA               IF+NQVR     FGG G
Sbjct: 208 ALVPKCELD-QLGVATSQDLHSRIMTQALRKIHYSLSRSQTLLIFVNQVRFSPKAFGGRG 266

Query: 130 GPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAP-PFKTAEFEL 188
              EVTCGGNAL+FYA+VRL + R+G +K  +++ G  V  +VVKNKLAP   K AE  +
Sbjct: 267 PMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCAQVVKNKLAPAAMKKAELGI 326

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAEN 237
           +FG+G  +++E+  L+ ++ LI K    Y+   + F   +A + FLA+N
Sbjct: 327 KFGRGFCQESEVFALACEHGLIMKDEGNYFIEGEPFTSREAAEQFLAKN 375


>Medtr8g461220.1 | DNA repair and recombination protein | HC |
           chr8:21510596-21499546 | 20130731
          Length = 418

 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 6/230 (2%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           G    VDAEHA D   ++++GV+  NL++ QPD GE AL + D + RSG           
Sbjct: 148 GNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVS 207

Query: 71  XXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFGG 130
              P+ E++GE+G   M +QARLMSQA               IF+NQ+R KI  +  +G 
Sbjct: 208 ALTPRAEVEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY--YGN 265

Query: 131 PTEVTCGGNALKFYASVRLNIKRIGFVK--KGEEIIGSQVVVKVVKNKLAPPFKTAEFEL 188
           P EVT GG ALKF+ASVRL I+ IG +K  KG+E +G +V V+V K+K++ P+K AEF++
Sbjct: 266 P-EVTSGGIALKFFASVRLEIRSIGKIKSAKGDEEVGLKVRVRVQKSKVSRPYKVAEFDI 324

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSF-RGGDALKDFLAEN 237
            FG+G+++   I+  +    ++ K GS Y Y +    +G +    +L EN
Sbjct: 325 SFGEGVNKLGCILDCAEMMNIVLKKGSWYSYGDHRLGQGREKTLQYLKEN 374


>Medtr7g090860.1 | RecA-like protein | LC | chr7:35800572-35796139 |
           20130731
          Length = 527

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 35/173 (20%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           GYCA+ D E ALD +L ES+ VN+ N L+S  D  +  + +VDTL +             
Sbjct: 338 GYCAYPDEESALDFSLVESMDVNSKNPLISTHDYAKYLVIMVDTLTK------------- 384

Query: 71  XXXPKGELDGEMGDAHMAMQARL-MSQAXXXXXXXXXXXXXXXIFINQVRSKI----STF 125
                              ++R   +                 +F+  +RSK+      F
Sbjct: 385 --------------VESCYESRFTFTNDDTITVENYYRTPKLLVFV--IRSKVRFSPKAF 428

Query: 126 GGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLA 178
            G G   EVT GGN L+FY +VRL + R+  +K  +++ G  V V+VVKN LA
Sbjct: 429 EGHGLMEEVTRGGNGLRFYPAVRLRLSRM-LIKTEDKVEGIMVCVQVVKNILA 480