Miyakogusa Predicted Gene

Lj4g3v2140280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2140280.1 tr|B9I4Z4|B9I4Z4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_772304 PE=4
SV=1,50,0.000000000001,seg,NULL,CUFF.50365.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g126910.1 | EndA/NucM family nuclease | HC | chr4:52583052...    92   2e-19
Medtr4g126910.2 | EndA/NucM family nuclease | HC | chr4:52583174...    92   2e-19

>Medtr4g126910.1 | EndA/NucM family nuclease | HC |
           chr4:52583052-52587210 | 20130731
          Length = 378

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 86  VAAASDYQSPSTYSCEDIANYYSPLKNSRLRGEAFKRKLNTIIAPHHSLSYQQ 138
           VA AS+Y +PSTYSCED+ANYYSPLK+ RL+GE  KRKLN+IIAPHHSLSYQ+
Sbjct: 88  VAVASEYPTPSTYSCEDVANYYSPLKHFRLKGEKLKRKLNSIIAPHHSLSYQE 140


>Medtr4g126910.2 | EndA/NucM family nuclease | HC |
           chr4:52583174-52587210 | 20130731
          Length = 267

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 86  VAAASDYQSPSTYSCEDIANYYSPLKNSRLRGEAFKRKLNTIIAPHHSLSYQQ 138
           VA AS+Y +PSTYSCED+ANYYSPLK+ RL+GE  KRKLN+IIAPHHSLSYQ+
Sbjct: 88  VAVASEYPTPSTYSCEDVANYYSPLKHFRLKGEKLKRKLNSIIAPHHSLSYQE 140