Miyakogusa Predicted Gene

Lj4g3v2139640.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2139640.3 Non Characterized Hit- tr|I1MSJ9|I1MSJ9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.632
PE=4,85.44,0,seg,NULL; CHOLINE MONOOXYGENASE,NULL; IRON-SULFUR DOMAIN
CONTAINING PROTEIN,NULL; Ring_hydroxyl_A,Ar,CUFF.50373.3
         (412 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127130.1 | choline monooxygenase | HC | chr4:52734192-527...   688   0.0  
Medtr4g127130.2 | choline monooxygenase | HC | chr4:52734192-527...   519   e-147

>Medtr4g127130.1 | choline monooxygenase | HC |
           chr4:52734192-52738891 | 20130731
          Length = 411

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/412 (80%), Positives = 359/412 (87%), Gaps = 5/412 (1%)

Query: 1   MAMSMRVAPF-IPNLRQGEPRNLNFPNKHSTLS-CCSLRSSDPHVSQKLVKHFNPNIPIE 58
           MAM+M+V PF IPNL++ +P+NLNFPNKHS+   CCSL SSD  VSQKL + FNPNIPIE
Sbjct: 1   MAMNMQVTPFNIPNLQKRQPQNLNFPNKHSSKPICCSLSSSDMVVSQKLAQQFNPNIPIE 60

Query: 59  EAVTPPTSWYTDPSFFQLELDRVFYRGWQAVGSTEQLKDPHDFFTGRLGDVEFVVCRDDS 118
           +AVTPP+SWY DPSFF LELDRVFYRGWQAVGS EQ+K+P +FFTGRLGDVEFVVCRDDS
Sbjct: 61  KAVTPPSSWYIDPSFFHLELDRVFYRGWQAVGSMEQIKNPGEFFTGRLGDVEFVVCRDDS 120

Query: 119 GKVCAFHNVCRHHASLLASGSGQKSCFVCPYHGWTYGLNGALLKANRISGMRDFNVKDFG 178
           G V AF+NVCRHHAS+LASGSGQKSCFVCPYHGWTYGLNG LLKA RISGMRDFNV DFG
Sbjct: 121 GNVRAFYNVCRHHASILASGSGQKSCFVCPYHGWTYGLNGNLLKATRISGMRDFNVNDFG 180

Query: 179 LIPIKVATWGPFVLLNLEKENLSQKEADHHNVAEEWLGSCSEILSTNGVDSSLSYVCRRE 238
           LIPIKVATWGPFVLLN  KE   ++E D+HNVAEEWLGSC+E+LSTNGVDSSLSYVCRRE
Sbjct: 181 LIPIKVATWGPFVLLNFGKE---KEEVDNHNVAEEWLGSCTELLSTNGVDSSLSYVCRRE 237

Query: 239 YTIDCNWKVFCDNYLDGGYHVPYAHKGLASGLKLDSYSITMFXXXXXXXXXXXXXXXNGN 298
           YTI+CNWKVFCDNYLDGGYHVPYAHK LASGL LDSYS  +F                 N
Sbjct: 238 YTIECNWKVFCDNYLDGGYHVPYAHKDLASGLNLDSYSTKLFERVSIQSCEGGSEKSKEN 297

Query: 299 YDRLGRKAIYAFIYPNFMINRYGPWMDTNLVLPLGPNKCQVVFDYYLEHSLQDDKDFIEK 358
            DRLGRKAIYAFIYPNFMINRYGPWMDTNLVLPLGP+KCQVVFDYYLE SLQ D+DFIEK
Sbjct: 298 NDRLGRKAIYAFIYPNFMINRYGPWMDTNLVLPLGPSKCQVVFDYYLEPSLQGDRDFIEK 357

Query: 359 SLQDSEKVQVEDIVLCEGVQKGLQSPAYFVGRYAPTVEQAMHHFHCLLYEDM 410
           SLQDSEKVQ+EDIVL EGVQKGLQSPAY VGRYAP VEQAMHHFHCLLYE++
Sbjct: 358 SLQDSEKVQIEDIVLSEGVQKGLQSPAYSVGRYAPKVEQAMHHFHCLLYENL 409


>Medtr4g127130.2 | choline monooxygenase | HC |
           chr4:52734192-52738899 | 20130731
          Length = 326

 Score =  519 bits (1337), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/322 (77%), Positives = 274/322 (85%), Gaps = 5/322 (1%)

Query: 1   MAMSMRVAPF-IPNLRQGEPRNLNFPNKHSTLS-CCSLRSSDPHVSQKLVKHFNPNIPIE 58
           MAM+M+V PF IPNL++ +P+NLNFPNKHS+   CCSL SSD  VSQKL + FNPNIPIE
Sbjct: 1   MAMNMQVTPFNIPNLQKRQPQNLNFPNKHSSKPICCSLSSSDMVVSQKLAQQFNPNIPIE 60

Query: 59  EAVTPPTSWYTDPSFFQLELDRVFYRGWQAVGSTEQLKDPHDFFTGRLGDVEFVVCRDDS 118
           +AVTPP+SWY DPSFF LELDRVFYRGWQAVGS EQ+K+P +FFTGRLGDVEFVVCRDDS
Sbjct: 61  KAVTPPSSWYIDPSFFHLELDRVFYRGWQAVGSMEQIKNPGEFFTGRLGDVEFVVCRDDS 120

Query: 119 GKVCAFHNVCRHHASLLASGSGQKSCFVCPYHGWTYGLNGALLKANRISGMRDFNVKDFG 178
           G V AF+NVCRHHAS+LASGSGQKSCFVCPYHGWTYGLNG LLKA RISGMRDFNV DFG
Sbjct: 121 GNVRAFYNVCRHHASILASGSGQKSCFVCPYHGWTYGLNGNLLKATRISGMRDFNVNDFG 180

Query: 179 LIPIKVATWGPFVLLNLEKENLSQKEADHHNVAEEWLGSCSEILSTNGVDSSLSYVCRRE 238
           LIPIKVATWGPFVLLN  KE   ++E D+HNVAEEWLGSC+E+LSTNGVDSSLSYVCRRE
Sbjct: 181 LIPIKVATWGPFVLLNFGKE---KEEVDNHNVAEEWLGSCTELLSTNGVDSSLSYVCRRE 237

Query: 239 YTIDCNWKVFCDNYLDGGYHVPYAHKGLASGLKLDSYSITMFXXXXXXXXXXXXXXXNGN 298
           YTI+CNWKVFCDNYLDGGYHVPYAHK LASGL LDSYS  +F                 N
Sbjct: 238 YTIECNWKVFCDNYLDGGYHVPYAHKDLASGLNLDSYSTKLFERVSIQSCEGGSEKSKEN 297

Query: 299 YDRLGRKAIYAFIYPNFMINRY 320
            DRLGRKAIYAFIYPNFMINR+
Sbjct: 298 NDRLGRKAIYAFIYPNFMINRF 319