Miyakogusa Predicted Gene

Lj4g3v2139570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2139570.1 tr|Q0JAK5|Q0JAK5_ORYSJ OSJNBa0009P12.21 protein
OS=Oryza sativa subsp. japonica GN=Os04g0592700 PE=2,37.41,1e-18,WD40
repeat-like,WD40-repeat-containing domain; no description,WD40/YVTN
repeat-like-containing doma,gene.g56229.t1.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g105700.1 | transducin/WD40 repeat protein | HC | chr4:438...   113   8e-26

>Medtr4g105700.1 | transducin/WD40 repeat protein | HC |
           chr4:43886721-43877728 | 20130731
          Length = 908

 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 5/133 (3%)

Query: 1   MIACICGDAIKILNSTTKSSITSAPHGYPESPKALSLSPCNRFLYTSA-SREIHAWEVST 59
            I C C D+IKI++S   +SI S   G  E   AL L P ++ L++++ SR+I  W++ T
Sbjct: 33  FIVCACSDSIKIVDSAN-ASIKSTLEGDSEQVTALVLGPDDKLLFSASHSRQIRVWDLET 91

Query: 60  LTRSKNVWKGTKGTVTCMECHPSGKWLATGGDDRKVLIFNVDCDSGTHCKKILVHGAIVS 119
           L   ++ WKG +G V CM   PSG  LATGG DRKVL+++VD    TH  K   HG +VS
Sbjct: 92  LKCVRS-WKGHEGPVMCMAVDPSGGLLATGGADRKVLVWDVDGGFCTHYFK--GHGGVVS 148

Query: 120 CVMFHPDPDKLLV 132
           C+MFHPDP+K L+
Sbjct: 149 CIMFHPDPEKQLL 161