Miyakogusa Predicted Gene
- Lj4g3v2139160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2139160.1 Non Characterized Hit- tr|C0P3W2|C0P3W2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.96,0.000000000009,K
homology RNA-binding domain,K Homology domain; KH DOMAIN-CONTAINING
PROTEIN,NULL; KH DOMAIN CONTAI,CUFF.50329.1
(403 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 540 e-153
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 500 e-141
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 268 1e-71
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 267 1e-71
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 204 1e-52
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 201 1e-51
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 201 1e-51
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 102 1e-21
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 102 1e-21
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 101 1e-21
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 92 1e-18
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 92 1e-18
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 92 1e-18
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 91 1e-18
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 91 2e-18
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 89 1e-17
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 88 2e-17
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 88 2e-17
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 88 2e-17
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 87 2e-17
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 86 6e-17
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 86 6e-17
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 86 6e-17
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 86 6e-17
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 86 6e-17
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 76 7e-14
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 76 8e-14
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 68 1e-11
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 55 2e-07
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 55 2e-07
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 54 4e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 54 4e-07
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 53 5e-07
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/394 (71%), Positives = 316/394 (80%), Gaps = 12/394 (3%)
Query: 1 MATP-DPILNGT-TSQPLTXXXXXXX---XXXXDKRWPGWPGHCVYRIIVPVLKVGSIIG 55
MAT +PI NGT S+ T +KRWPGWPGHCV+R+IVPV+KVG IIG
Sbjct: 1 MATAVEPIPNGTLQSESYTIFDAAANPTDESESEKRWPGWPGHCVFRLIVPVVKVGIIIG 60
Query: 56 RKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGL 115
RKGELIKKTCEET ARIRVLDAP+GTPDRIVL+SGKE+ EAPLSPAMDA++RIFKRVSGL
Sbjct: 61 RKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAILRIFKRVSGL 120
Query: 116 AEIE----AAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSY 171
+E + AA G CS+RLLVASTQAINLIGKQGS IK+IQE+TGA +RVL+GDELPSY
Sbjct: 121 SETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPSY 180
Query: 172 AAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGNATISQDRQTDAWAD 231
A ADERI+++QGE LKVLKALEAVVGHLRKFLVD +V+PLFEK NATISQDRQTDAWAD
Sbjct: 181 AGADERIIDLQGETLKVLKALEAVVGHLRKFLVDSSVIPLFEKTCNATISQDRQTDAWAD 240
Query: 232 KPSLHSASQTSIVADIPLSNKRDSFYADREXXXXXXXXXXXXXLYGQDXXXXXXXXXXXX 291
KPSL+SASQ SIVADIP KRDSF+ADRE LYGQD
Sbjct: 241 KPSLYSASQPSIVADIP--TKRDSFFADRESQLDSLLSSSTMSLYGQDSSSISGLRSSAF 298
Query: 292 X-XTPPIVTTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQESRVPDEIIVEIK 350
+ IVTTVIQTMQIPLSYAEDIIG+QG+NIDYIRRTSGAILTVQESRVPDEIIVEIK
Sbjct: 299 NRASASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIK 358
Query: 351 GTSSQVQIAQQLIQDVITHHQEPVASSYSRLDAG 384
GTS+QVQ AQQLIQ+VIT+H E +AS+Y+RLD G
Sbjct: 359 GTSTQVQTAQQLIQEVITNHNETIASNYARLDTG 392
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/363 (67%), Positives = 295/363 (81%), Gaps = 5/363 (1%)
Query: 29 DKRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV 88
++RWPGWPG CV+R+IVPV KVG IIGRKG+LIKK C+ET+AR+RVLDA LG PDRI+L+
Sbjct: 60 EQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILI 119
Query: 89 SGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAA----PGATFCSVRLLVASTQAINLIGK 144
SGKEE EA +SPAMDAVIRIFKRVSGL+E ++ G T CS+RLLVASTQAI+LIGK
Sbjct: 120 SGKEELEAAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGK 179
Query: 145 QGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLV 204
QG++I+SIQES+GA+VRVL+GDE+ +A A+ERIV++QGE L VLKALEAV+GHLRKFLV
Sbjct: 180 QGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLV 239
Query: 205 DHTVLPLFEKPGNATI-SQDRQTDAWADKPSLHSASQTSIVADIPLSNKRDSFYADREXX 263
DH++LP++EK NA++ QDRQ + W+DKP LH+ SQTS+ +DIP KRDS +ADRE
Sbjct: 240 DHSILPVYEKTYNASLPQQDRQAETWSDKPLLHTTSQTSMFSDIPFPTKRDSVFADRESH 299
Query: 264 XXXXXXXXXXXLYGQDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSYAEDIIGMQGSNI 323
LYGQD PIVTTVIQTMQIPLSYAEDIIG+QG+NI
Sbjct: 300 LDSLLSSSTMSLYGQDSSLSGVRSSSLSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNI 359
Query: 324 DYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQIAQQLIQDVITHHQEPVASSYSRLDA 383
DYIRRTSGAILTVQESRVPDEI+VEIKGT+SQVQ AQQLIQ+VI+ H+EPV +SY RLDA
Sbjct: 360 DYIRRTSGAILTVQESRVPDEIVVEIKGTTSQVQTAQQLIQEVISSHREPVTNSYGRLDA 419
Query: 384 GRI 386
GR+
Sbjct: 420 GRM 422
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 216/357 (60%), Gaps = 23/357 (6%)
Query: 29 DKRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV 88
+K+WPGWPG V+R++VP KVG IIGRKGE IKK EETRAR+++LD P GT +R V+V
Sbjct: 37 EKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV 96
Query: 89 SGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPG-ATFCSVRLLVASTQAINLIGKQGS 147
S K+EP + L PA+D +++ KR+ + ++A G A S + LV ++QA +LIGKQG
Sbjct: 97 SAKDEPGSSLPPAVDGLLKAHKRL--IDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGG 154
Query: 148 LIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHT 207
+KSIQE++ VRVL ++LP +A D+R+VEV G+P+ V KA+E + HL+KFLVD +
Sbjct: 155 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRS 214
Query: 208 VLPLFEKPGNATISQDRQTD----------AWAD----KPSLHSASQTSIVAD-IPLSNK 252
++P+FE + ++ + + +W P+ + +P +
Sbjct: 215 IIPIFEM--SMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQ 272
Query: 253 RDSFYADREXXXXXXXXXXXX-XLYGQDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSY 311
D++Y E YG+D P +VT + Q MQIPLSY
Sbjct: 273 VDNYYPPAEMPPPLDKQPHHGISAYGRD-ASIGVHASSNTQSAPSMVTQITQQMQIPLSY 331
Query: 312 AEDIIGMQGSNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQIAQQLIQDVI 367
A+ +IG G+NI YIRR SGA +T+QE+R VP E+ VEI GT+SQVQ AQQLIQ+ +
Sbjct: 332 ADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 388
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 216/357 (60%), Gaps = 23/357 (6%)
Query: 29 DKRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV 88
+K+WPGWPG V+R++VP KVG IIGRKGE IKK EETRAR+++LD P GT +R V+V
Sbjct: 105 EKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV 164
Query: 89 SGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPG-ATFCSVRLLVASTQAINLIGKQGS 147
S K+EP + L PA+D +++ KR+ + ++A G A S + LV ++QA +LIGKQG
Sbjct: 165 SAKDEPGSSLPPAVDGLLKAHKRL--IDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGG 222
Query: 148 LIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHT 207
+KSIQE++ VRVL ++LP +A D+R+VEV G+P+ V KA+E + HL+KFLVD +
Sbjct: 223 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRS 282
Query: 208 VLPLFEKPGNATISQDRQTD----------AWAD----KPSLHSASQTSIVAD-IPLSNK 252
++P+FE + ++ + + +W P+ + +P +
Sbjct: 283 IIPIFEM--SMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQ 340
Query: 253 RDSFYADREXXXXXXXXXXXX-XLYGQDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSY 311
D++Y E YG+D P +VT + Q MQIPLSY
Sbjct: 341 VDNYYPPAEMPPPLDKQPHHGISAYGRD-ASIGVHASSNTQSAPSMVTQITQQMQIPLSY 399
Query: 312 AEDIIGMQGSNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQIAQQLIQDVI 367
A+ +IG G+NI YIRR SGA +T+QE+R VP E+ VEI GT+SQVQ AQQLIQ+ +
Sbjct: 400 ADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 456
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 136/187 (72%), Gaps = 3/187 (1%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
K+W GWPG V+R++VP KVGSIIGRKGE IKK EETRAR+++LD P GT +R V+VS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 90 GKEEPEAPLSPAMDAVIRIFKRVSGLAE--IEAAPGATFCSV-RLLVASTQAINLIGKQG 146
KEEP+ P+ PA++ ++R+ K+V+ + + A GA S+ RLLVA TQA +LIGKQG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQG 275
Query: 147 SLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDH 206
S IK Q+STG +R+L + LP +A D+ IVE+QGEP V KA+E + HLRKFLVD
Sbjct: 276 STIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVDR 335
Query: 207 TVLPLFE 213
+++ +FE
Sbjct: 336 SIVGVFE 342
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 299 TTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQ 357
T V Q MQIPLS+A+ +IG G+NI YIRR SGA +T+QE+R VP E+ VEI GT+SQ+Q
Sbjct: 438 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 497
Query: 358 IAQQLIQDVI 367
AQQL+Q+ +
Sbjct: 498 AAQQLVQNFM 507
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 137/188 (72%), Gaps = 4/188 (2%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
K+W GWPG V+R++VP KVGSIIGRKGE IKK EETRAR+++LD P GT +R V+VS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 90 GKEEPEAPLSPAMDAVIRIFKRVSGLAE--IEAAPGATFCSV-RLLVASTQAINLIGKQG 146
KEEP+ P+ PA++ ++R+ K+V+ + + A GA S+ RLLVA TQA +LIGKQG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQG 275
Query: 147 SLIKSIQESTGAAVRVL-TGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVD 205
S IK Q+STG +R+L + + LP +A D+ IVE+QGEP V KA+E + HLRKFLVD
Sbjct: 276 STIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVD 335
Query: 206 HTVLPLFE 213
+++ +FE
Sbjct: 336 RSIVGVFE 343
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 299 TTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQ 357
T V Q MQIPLS+A+ +IG G+NI YIRR SGA +T+QE+R VP E+ VEI GT+SQ+Q
Sbjct: 439 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 498
Query: 358 IAQQLIQDVI 367
AQQL+Q+ +
Sbjct: 499 AAQQLVQNFM 508
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 137/188 (72%), Gaps = 4/188 (2%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
K+W GWPG V+R++VP KVGSIIGRKGE IKK EETRAR+++LD P GT +R V+VS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 90 GKEEPEAPLSPAMDAVIRIFKRVSGLAE--IEAAPGATFCSV-RLLVASTQAINLIGKQG 146
KEEP+ P+ PA++ ++R+ K+V+ + + A GA S+ RLLVA TQA +LIGKQG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQG 275
Query: 147 SLIKSIQESTGAAVRVL-TGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVD 205
S IK Q+STG +R+L + + LP +A D+ IVE+QGEP V KA+E + HLRKFLVD
Sbjct: 276 STIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVD 335
Query: 206 HTVLPLFE 213
+++ +FE
Sbjct: 336 RSIVGVFE 343
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 299 TTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQ 357
T V Q MQIPLS+A+ +IG G+NI YIRR SGA +T+QE+R VP E+ VEI GT+SQ+Q
Sbjct: 439 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 498
Query: 358 IAQQLIQDVI 367
AQQL+Q+ +
Sbjct: 499 AAQQLVQNFM 508
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 20/178 (11%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV-------SGKE 92
VYR + PV K+GSIIGR GE++K+ +T+A+IR+ + G +R+V V + E
Sbjct: 50 VYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFE 109
Query: 93 EPEAPLSPAMDAVIRIFKRVSGLAE-----------IEAAPGATFCSVRLLVASTQAINL 141
+ + PAMDA++RI ++V +AE +E G + +LLVAS Q +
Sbjct: 110 DSGEFMCPAMDALVRIHQKV--IAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCV 167
Query: 142 IGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
IGK G ++++I+ TGA +R+L D LP A + +V++ GE V KAL V L
Sbjct: 168 IGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V + D ++ +S +E E P S ++A + + R S ++E G
Sbjct: 323 QDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCS--EKVERDSGIL 380
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T A +R+L+ ++LP A D+ +V++ GE
Sbjct: 381 SFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGEL 440
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 441 DIAKDALLQVLTRLRANLFD 460
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 20/178 (11%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV-------SGKE 92
VYR + PV K+GSIIGR GE++K+ +T+A+IR+ + G +R+V V + E
Sbjct: 50 VYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFE 109
Query: 93 EPEAPLSPAMDAVIRIFKRVSGLAE-----------IEAAPGATFCSVRLLVASTQAINL 141
+ + PAMDA++RI ++V +AE +E G + +LLVAS Q +
Sbjct: 110 DSGEFMCPAMDALVRIHQKV--IAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCV 167
Query: 142 IGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
IGK G ++++I+ TGA +R+L D LP A + +V++ GE V KAL V L
Sbjct: 168 IGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V + D ++ +S +E E P S ++A + + R S ++E G
Sbjct: 323 QDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCS--EKVERDSGIL 380
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T A +R+L+ ++LP A D+ +V++ GE
Sbjct: 381 SFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGEL 440
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 441 DIAKDALLQVLTRLRANLFD 460
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 101/169 (59%), Gaps = 7/169 (4%)
Query: 37 GHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDR--IVLVSGKEEP 94
GH V+R++ ++G+ IG+ G +IK + T ARIR+ DAP+ P+R +V+V+ +
Sbjct: 18 GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDG 77
Query: 95 EAPLSPAMDAVIRIFKRVSGLAEIEA---APGATFCSVRLLVASTQAINLIGKQGSLIKS 151
+ L+P +A++++F+R+ +A E+ G S RLLV + QA +IGK G ++
Sbjct: 78 DVSLNP-QEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAK 136
Query: 152 IQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR 200
I+ TG +RVL D+LP+ + I+E+QG V KAL AV G L+
Sbjct: 137 IRADTGCRIRVLN-DKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQ 184
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 35/355 (9%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSP 100
+RI+ ++G+++G+ G ++K ET A I V + DR++ ++ E PE+ SP
Sbjct: 268 FRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLITITALENPESRFSP 327
Query: 101 AMDAVIRIFKR-----VSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQES 155
A +AV+ +F R + + + + ++ + +L+V S Q L+GK G+++ ++++
Sbjct: 328 AQEAVVLVFCRSIECCIEKVVDWRSNKESSV-TAQLVVPSNQVGVLLGKGGAIVSEMRKA 386
Query: 156 TGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKP 215
T ++R+ E+P A+ ++++V++ GE V AL LR DH L
Sbjct: 387 TWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLR----DHIFLIAQNSG 442
Query: 216 GNATISQDR---------QTDAWADK-PSLHSASQTSIVADIPLSNKRDSFYADREXXXX 265
G + R Q+ ++ PS+HS SQ+ + + LS R+S +
Sbjct: 443 GTGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSLSQS--MDHLTLS--RNSGRSASSGVWA 498
Query: 266 XXXXXXXXXLYGQDXXX---------XXXXXXXXXXXTPPIVTTVIQTMQIPLSYAEDII 316
Y D I+T + +P +
Sbjct: 499 PKVVGGKNSRYTDDAGRRLNPREGDLELASGSNTVIGNAAIITNTTVEIMLPNDIIGSVY 558
Query: 317 GMQGSNIDYIRRTSGAILTVQESR--VPDEIIVEIKGTSSQVQIAQQLIQDVITH 369
G GSN+D +R+ SGA + E R D + + GT + Q AQ L+Q I +
Sbjct: 559 GENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIVLSGTPDETQAAQSLLQAYILN 613
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK-------E 92
V+R + P K+GSIIGR GE++K+ ET+A+IR+ + G +R+V V +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 93 EPEAPLSPAMDAVIRIFKRV--SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIK 150
+ + +SPA DA+ +I RV L + G + +LLV S Q ++GK G +++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQ 167
Query: 151 SIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+++ TGA +R+L D +P+ A + +V++ G+ V KAL + L
Sbjct: 168 NLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V D+ D ++ +S KE E SP ++A + + R S +E ++ G
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDS--GII 372
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T + +R+L+ + LP A+ D+ +V++ G+
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDL 432
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 433 DVAKDALVQVLTRLRANLFD 452
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK-------E 92
V+R + P K+GSIIGR GE++K+ ET+A+IR+ + G +R+V V +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 93 EPEAPLSPAMDAVIRIFKRV--SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIK 150
+ + +SPA DA+ +I RV L + G + +LLV S Q ++GK G +++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQ 167
Query: 151 SIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+++ TGA +R+L D +P+ A + +V++ G+ V KAL + L
Sbjct: 168 NLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V D+ D ++ +S KE E SP ++A + + R S +E ++ G
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDS--GII 372
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T + +R+L+ + LP A+ D+ +V++ G+
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDL 432
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 433 DVAKDALVQVLTRLRANLFD 452
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK-------E 92
V+R + P K+GSIIGR GE++K+ ET+A+IR+ + G +R+V V +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 93 EPEAPLSPAMDAVIRIFKRV--SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIK 150
+ + +SPA DA+ +I RV L + G + +LLV S Q ++GK G +++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQ 167
Query: 151 SIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+++ TGA +R+L D +P+ A + +V++ G+ V KAL + L
Sbjct: 168 NLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V D+ D ++ +S KE E SP ++A + + R S +E ++ G
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDS--GII 372
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T + +R+L+ + LP A+ D+ +V++ G+
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDL 432
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 433 DVAKDALVQVLTRLRANLFD 452
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK-------E 92
V+R + P K+GSIIGR GE++K+ ET+A+IR+ + G +R+V V +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 93 EPEAPLSPAMDAVIRIFKRV--SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIK 150
+ + +SPA DA+ +I RV L + G + +LLV S Q ++GK G +++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQ 167
Query: 151 SIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+++ TGA +R+L D +P+ A + +V++ G+ V KAL + L
Sbjct: 168 NLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V D+ D ++ +S KE E SP ++A + + R S +E ++ G
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDS--GII 372
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEP 185
+ RLLV+S++ LIGK GS+I ++ T + +R+L+ + LP A+ D+ +V++ G+
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDL 432
Query: 186 LKVLKALEAVVGHLRKFLVD 205
AL V+ LR L D
Sbjct: 433 DVAKDALVQVLTRLRANLFD 452
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK-------E 92
V+R + P K+GSIIGR GE++K+ ET+A+IR+ + G +R+V V +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 93 EPEAPLSPAMDAVIRIFKRV--SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIK 150
+ + +SPA DA+ +I RV L + G + +LLV S Q ++GK G +++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQ 167
Query: 151 SIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+++ TGA +R+L D +P+ A + +V++ G+ V KAL + L
Sbjct: 168 NLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 66 EETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGAT 125
+++ A I+V D+ D ++ +S KE E SP ++A + + R S +E ++ G
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDS--GII 372
Query: 126 FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVE 180
+ RLLV+S++ LIGK GS+I ++ T + +R+L+ + LP A+ D+ +V+
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQ 427
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 36 PGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGK---- 91
PG +R++ VG +IG G ++ + ET +I DA +GT DR++LV G
Sbjct: 36 PGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDR 95
Query: 92 -----EEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQG 146
+ E +S A + V+R+F RV GL + G + +LL S+Q ++GK G
Sbjct: 96 KGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYG--KLLAHSSQVGAIVGKGG 153
Query: 147 SLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKAL 192
I +I+ ++G+ +RV P AA DE ++ + GE L V KAL
Sbjct: 154 KNISNIRNNSGSNIRVCPA---PHCAAKDEELILITGESLAVKKAL 196
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 37 GHCV-YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGT-PDRIVLVSGKEEP 94
GH V +R++ GS+IG+KG +++ T A I V PLG +RIV +S E
Sbjct: 272 GHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASI-VFAPPLGQYEERIVTISAFENL 330
Query: 95 EAPLSPAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSL 148
E+ SPA DAVI +F R+ +G A + RLL+ ++ L G +G +
Sbjct: 331 ESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPV--TARLLITTSTLHLLTGNEGQV 388
Query: 149 IKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR------KF 202
I +++ +GA +++L G+ +P+ A+ ++ +V++ G V AL + +R +
Sbjct: 389 ISELRQVSGADIQLLHGEPIPN-ASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNEL 447
Query: 203 LVDHTVLPLF 212
L + + P F
Sbjct: 448 LAEAKIKPSF 457
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 10/178 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLS 99
VY+++ KVGS+IG+ G +++ ET A I+++DA + +R+V++S E + S
Sbjct: 228 VYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQKHS 287
Query: 100 PAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
PA DAVIR+ R L EI + RLLV S Q L+GK G +I ++ TGA
Sbjct: 288 PAQDAVIRVHGR---LTEI-GFEHSNAVVARLLVRSPQVGCLLGKGGHVISEMRRVTGAN 343
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGN 217
+R+ + +++ Y + +E +V+V G V AL + +R+ T++P+ P N
Sbjct: 344 IRIFSKEQI-KYISHNEEVVQVIGTLQSVQDALFHITSRIRE-----TIIPMKNTPPN 395
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 158/353 (44%), Gaps = 27/353 (7%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSP 100
+R++ P VG++IG+ G +IK +ET + I+V++A G+ D I+++SG P+ +SP
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 101 AMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 160
+A+ R+ R+S A +++ + R++V+S L+GK GS+I ++ +GA +
Sbjct: 374 VQEAIFRVQNRIS-RAMLDSKEHSMLA--RVIVSSKHIGCLLGKGGSIIAEMRNLSGAHI 430
Query: 161 RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR-KFLVDHTVLPLFEKPGN-A 218
R+L D+ P + D+ +++V G V AL + LR F D P P N A
Sbjct: 431 RMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRD--AFPSANFPSNSA 488
Query: 219 TISQDRQTDAWADKPSLHSASQTSIV------ADIPLSNK---RDSFY--------ADRE 261
+ Q + + L S + AD PL + ++ Y ++R+
Sbjct: 489 FLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLISERK 548
Query: 262 XXXXXXXXXXXXXLYGQDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSYAEDIIGMQGS 321
+ + + PI+T+ + +P + +I G G
Sbjct: 549 PWGPKGILEGGGHMGLPEFAGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEIYGENGE 608
Query: 322 NIDYIRRTSGAILTVQESRVPD--EIIVEIKGTSSQVQIAQQLIQDVITHHQE 372
+ I + S A + + + +P E + I GT Q AQ LIQ + +E
Sbjct: 609 CLKQILQISDANVIITDP-IPGAVETKIIISGTPEQTNAAQSLIQAFVMSERE 660
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 102 MDAVIRIFKRVSGLAEIEAAPGAT--FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
M AV+ +F+RV AE E + + +RLL+ S Q ++GK GS+IK + +GA
Sbjct: 141 MRAVMLVFERV---AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQ 197
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL-RKFLVDHTVLP 210
+R+L +E+P+ A+ + +V++ G V +AL++V L DH LP
Sbjct: 198 IRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLP 249
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 158/353 (44%), Gaps = 27/353 (7%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSP 100
+R++ P VG++IG+ G +IK +ET + I+V++A G+ D I+++SG P+ +SP
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 101 AMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV 160
+A+ R+ R+S A +++ + R++V+S L+GK GS+I ++ +GA +
Sbjct: 374 VQEAIFRVQNRIS-RAMLDSKEHSMLA--RVIVSSKHIGCLLGKGGSIIAEMRNLSGAHI 430
Query: 161 RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR-KFLVDHTVLPLFEKPGN-A 218
R+L D+ P + D+ +++V G V AL + LR F D P P N A
Sbjct: 431 RMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRD--AFPSANFPSNSA 488
Query: 219 TISQDRQTDAWADKPSLHSASQTSIV------ADIPLSNK---RDSFY--------ADRE 261
+ Q + + L S + AD PL + ++ Y ++R+
Sbjct: 489 FLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLISERK 548
Query: 262 XXXXXXXXXXXXXLYGQDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSYAEDIIGMQGS 321
+ + + PI+T+ + +P + +I G G
Sbjct: 549 PWGPKGILEGGGHMGLPEFAGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEIYGENGE 608
Query: 322 NIDYIRRTSGAILTVQESRVPD--EIIVEIKGTSSQVQIAQQLIQDVITHHQE 372
+ I + S A + + + +P E + I GT Q AQ LIQ + +E
Sbjct: 609 CLKQILQISDANVIITDP-IPGAVETKIIISGTPEQTNAAQSLIQAFVMSERE 660
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 102 MDAVIRIFKRVSGLAEIEAAPGAT--FCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
M AV+ +F+RV AE E + + +RLL+ S Q ++GK GS+IK + +GA
Sbjct: 141 MRAVMLVFERV---AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQ 197
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL-RKFLVDHTVLP 210
+R+L +E+P+ A+ + +V++ G V +AL++V L DH LP
Sbjct: 198 IRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLP 249
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 17/180 (9%)
Query: 37 GHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEA 96
GH +R++ ++G +IG+ G +IK T A+IR+ D+P +PDR+++V G +
Sbjct: 46 GHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDG 105
Query: 97 P--------------LSPAMDAVIRIFKRVSGL-AEIEAAP-GATFCSVRLLVASTQAIN 140
+S A +A++R+F R+ + AE+E G S RL+ S QA +
Sbjct: 106 KVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGS 165
Query: 141 LIGKQGSLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLR 200
+IGK G +++ I++ TG + V D LP+ ++ + ++E++G V KAL AV +L+
Sbjct: 166 VIGKGGKVVEKIKKDTGCKIWVCK-DNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQ 224
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSP 100
++II ++G +IG+ G +I+ ET A + V + DR++ ++ E PE+ SP
Sbjct: 333 FKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESRYSP 392
Query: 101 AMDAVIRIFKRVSGLAEIEAA-----PGATFCSVRLLVASTQAINLIGKQGSLIKSIQES 155
A A + +F R S A IE + + +L+V+S Q L+GK G ++ ++++
Sbjct: 393 AQKATVLVFSR-SVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKA 451
Query: 156 TGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTV 208
TGA++R++ D++ A+ ++++V++ GE V AL G LR L T+
Sbjct: 452 TGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTL 504
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
KR G ++RI+VP ++G +IG++G I+K E TRA I++ DA +R++++S
Sbjct: 93 KRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIIS 150
Query: 90 GKEEPEAPLSPAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIG 143
K+ E ++ A A+ +I + S A A ++RLL+A +QA LIG
Sbjct: 151 SKDNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 144 KQGSLIKSIQESTGAAVRVLTGDELPSYAAADE--RIVEVQGEPLKVLKALEAVVGHLRK 201
G I+ ++ S+GA + VL +LP A+A E R+V++ G+ V+KALE + LR+
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLS 99
++RI+VP ++G +IG++G I+K E TRA I++ DA +R++++S K+ E ++
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEM-VT 159
Query: 100 PAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQ 153
A A+ +I + S A A ++RLL+A +QA LIG G I+ ++
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 154 ESTGAAVRVLTGDELPSYAAADE--RIVEVQGEPLKVLKALEAVVGHLRK 201
S+GA + VL +LP A+A E R+V++ G+ V+KALE + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
KR G ++RI+VP ++G +IG++G I+K E TRA I++ DA +R++++S
Sbjct: 93 KRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIIS 150
Query: 90 GKEEPEAPLSPAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIG 143
K+ E ++ A A+ +I + S A A ++RLL+A +QA LIG
Sbjct: 151 SKDNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 144 KQGSLIKSIQESTGAAVRVLTGDELPSYAAADE--RIVEVQGEPLKVLKALEAVVGHLRK 201
G I+ ++ S+GA + VL +LP A+A E R+V++ G+ V+KALE + LR+
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
KR G ++RI+VP ++G +IG++G I+K E TRA I++ DA +R++++S
Sbjct: 93 KRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIIS 150
Query: 90 GKEEPEAPLSPAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIG 143
K+ E ++ A A+ +I + S A A ++RLL+A +QA LIG
Sbjct: 151 SKDNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 144 KQGSLIKSIQESTGAAVRVLTGDELPSYAAADE--RIVEVQGEPLKVLKALEAVVGHLRK 201
G I+ ++ S+GA + VL +LP A+A E R+V++ G+ V+KALE + LR+
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 30 KRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVS 89
KR G ++RI+VP ++G +IG++G I+K E TRA I++ DA +R++++S
Sbjct: 93 KRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIIS 150
Query: 90 GKEEPEAPLSPAMDAVIRIFKRV------SGLAEIEAAPGATFCSVRLLVASTQAINLIG 143
K+ E ++ A A+ +I + S A A ++RLL+A +QA LIG
Sbjct: 151 SKDNDEM-VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIG 209
Query: 144 KQGSLIKSIQESTGAAVRVLTGDELPSYAAADE--RIVEVQGEPLKVLKALEAVVGHLRK 201
G I+ ++ S+GA + VL +LP A+A E R+V++ G+ V+KALE + LR+
Sbjct: 210 MSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 34/339 (10%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLS 99
+ R++ P K+G +IG+ G IK+ + + ARI V D+ + ++ ++ E S
Sbjct: 313 IVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKS 372
Query: 100 PAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
A++AV+ + ++++ + + AP S+RLLV S +IG+ G++I I++ T A
Sbjct: 373 VAVEAVLLLQEKIN---DEDDAP----VSIRLLVPSKVIGCIIGRSGAIINEIRKRTKAD 425
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGNAT 219
+++ ++ P YA ++ +VEV GE V AL +V LR+ ++ N
Sbjct: 426 IQISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLK-----------NKD 473
Query: 220 ISQDRQTDAWADKPSLHSASQTSIVADIPLSNKRDSFYADREXXXXXXXXXXXXXLYGQD 279
I +R + + S S +++ IP + + Y R YG D
Sbjct: 474 IDHNRHIGSESLYASSSVLSAPPMLSSIPATAPALA-YDQRTGSGTGLGMHSSRSHYGYD 532
Query: 280 XXXXXXXXXXXXXXT----------PPIVTTVIQTMQIPLSYAEDIIGMQGSNIDYIRRT 329
PP+ T M +P + ++G G+N+ IR+
Sbjct: 533 SYSMEDNGYGSMSSYATNLYEGHRLPPLSTL---EMVVPANAVGKVMGKGGANLANIRKI 589
Query: 330 SGAILTVQESR-VPDEIIVEIKGTSSQVQIAQQLIQDVI 367
SGA + + ES+ + + I GTS + + A+ LIQ I
Sbjct: 590 SGATVEISESKSYRGDRVALISGTSEEKRAAENLIQAFI 628
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 23/182 (12%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV------------ 88
YRI+ P +GS+IG+ G++I +E+RA+++V+D G R++ +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 89 SGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGA-----TFCSVRLLVASTQAINLIG 143
+ + E PL A DA+I++ +S IE A + ++LV S+Q+ LIG
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISN--SIETAGDSEKKRKNKDECQILVPSSQSAILIG 161
Query: 144 KQGSLIKSIQESTGAAVRVLTGDEL-PSYAAADE--RIVEVQGEPLKVLKALEAVVGHLR 200
K G+ IK ++ T ++V+ D P ++ A E V V GE V +AL AV +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMY 220
Query: 201 KF 202
KF
Sbjct: 221 KF 222
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 29/337 (8%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLS 99
++RI+ PV +V I+G G +++ + +++ D G+ +++V+++ +E P +
Sbjct: 332 IFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMF 391
Query: 100 PAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
PA +A++ I + L++ + + RL+V S+ L GK SL I+ STGA+
Sbjct: 392 PAQEALLHIQTHIVDLSD-------SIITTRLIVPSSDIECLDGKNASL-SEIERSTGAS 443
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGNAT 219
V++L +ELP A + +V++ GE + V LR + V +L P +A
Sbjct: 444 VQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSY-VYRDILQWDTVPPSAP 502
Query: 220 ISQDRQTDAWADKPSLHSASQTSI--VADIPLSNKRDSFYADREXXXXXXXXXXXXXLYG 277
+ PS+ ++S S+ VA+ +N+ A +
Sbjct: 503 L------------PSVEASSSNSMATVAETATANQNMQSVA---VALASKESGGSTEMGK 547
Query: 278 QDXXXXXXXXXXXXXXTPPIVTTVIQTMQIPLSYAEDIIGMQGSNIDYIRRTSGAILTVQ 337
Q T +VT I + IP ++ S + I SGA + +
Sbjct: 548 QKESDRRDDLPTGLNRTVSLVTRSILEVVIPEYAVPKLLAKSKSKLAQISELSGANVKLV 607
Query: 338 ESRVPD--EIIVEIKGTSSQVQIAQQLIQDVITHHQE 372
E R PD E I++I GT Q + Q L+Q I QE
Sbjct: 608 EDR-PDEKEKIIQISGTPEQAERGQSLLQGFILSTQE 643
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 25/181 (13%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSG--KEEPEAPL 98
YR++ L+ G +IG+ G +IK + T A I V + G +RI+ +S + +P+ +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 99 ---SPAMDAVIRIFKRVSGLAEIEAAPG--------------ATFCSVRLLVASTQAINL 141
SPA +A++ I +R+ +E PG S RL+V+ +L
Sbjct: 125 PQFSPAQEALLLIHERL-----LENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSL 179
Query: 142 IGKQGSLIKSIQESTGAAVRVLTGDE-LPSYAAADERIVEVQGEPLKVLKALEAVVGHLR 200
+GK G +I+ ++ T +R+L D LP + E IV+V G+ V A + LR
Sbjct: 180 LGKGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLR 239
Query: 201 K 201
+
Sbjct: 240 E 240
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 41 YRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLV------------ 88
YRI+ P +GS+IG+ G++I +E+RA+++V+D G R++ +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 89 SGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGA-----TFCSVRLLVASTQAINLIG 143
+ + E PL A DA+I++ +S IE A + ++LV S+Q+ LIG
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISN--SIETAGDSEKKRKNKDECQILVPSSQSAILIG 161
Query: 144 KQGSLIKSIQESTGAAVRVLTGDEL-PSYAAADE--RIVEVQGEPLKVLKALEAVVGHLR 200
K G+ IK ++ T ++V+ D P ++ A E V + GE V +AL AV +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVSTIMY 221
Query: 201 KF 202
KF
Sbjct: 222 KF 223
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 40 VYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLS 99
+ R++ P K+G +IG+ G IK+ + + ARI V D+ + ++ ++ E S
Sbjct: 314 IVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKS 373
Query: 100 PAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAA 159
A++AV+ + ++++ + + AP S+RLLV S +IG+ G++I I++ T A
Sbjct: 374 VAVEAVLLLQEKIN---DEDDAP----VSIRLLVPSKVIGCIIGRSGAIINEIRKRTKAD 426
Query: 160 VRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRK 201
+++ ++ P YA ++ +VEV GE V AL +V LR+
Sbjct: 427 IQISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 467
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 42 RIIVPVLKVGSIIGRKGELIKKTCEETRARIRV---LDAPLGTPDRIVLVSGKEEPEAPL 98
+I +P +VG +IG+ GE IK ++ A+I+V +DA + R+V + G +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPD----- 143
Query: 99 SPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVAST-------QAIN-----LIGKQG 146
A+ + ++ V LAE EA GA+ R +VA + Q N +IGK G
Sbjct: 144 --AVSSAEKLINEV--LAEAEA--GASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGG 197
Query: 147 SLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAV 195
IKS+Q STGA ++V+ P + ER +++ G P ++ A + V
Sbjct: 198 ETIKSMQASTGARIQVIPLHPPPG-DTSTERTLKIDGTPDQIESAKQLV 245
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 27/169 (15%)
Query: 42 RIIVPVLKVGSIIGRKGELIKKTCEETRARIRV---LDAPLGTPDRIVLVSGKEEPEAPL 98
+I +P +VG IIG+ GE IK ++ A+I+V +DA +P+R+V ++G +
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSD----- 169
Query: 99 SPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINL------------IGKQG 146
A+ ++ K V LAE E+ G R + A IGK G
Sbjct: 170 --AIATAEKLIKEV--LAEAES--GGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGG 223
Query: 147 SLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAV 195
IKS+Q +TGA ++V+ LP + ER ++++G ++ A + V
Sbjct: 224 ETIKSMQATTGARIQVIP-LHLPPGDTSTERTLKIEGTSEQIESAKQLV 271
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 42 RIIVPVLKVGSIIGRKGELIKKTCEETRARI---RVLDAPLGTPDRIVLVSGKEEPEAPL 98
R +V GS+IG+ G I ++ ARI R + GT DRI++VSG +
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG------AI 92
Query: 99 SPAMDAVIRIFKRVSGLAEIEAAPGATF---CSVRLLVASTQAINLIGKQGSLIKSIQES 155
+ + AV I ++ L+E+ + VRL+V + +IGK G+ I+S E
Sbjct: 93 NEVLRAVELILSKL--LSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEE 150
Query: 156 TGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+ A +++ D SY ++RIV V G + ++ ++ +V L
Sbjct: 151 SQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 42 RIIVPVLKVGSIIGRKGELIKKTCEETRARI---RVLDAPLGTPDRIVLVSGKEEPEAPL 98
R +V GS+IG+ G I ++ ARI R + GT DRI++VSG +
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG------AI 92
Query: 99 SPAMDAVIRIFKRVSGLAEIEAAPGATF---CSVRLLVASTQAINLIGKQGSLIKSIQES 155
+ + AV I ++ L+E+ + VRL+V + +IGK G+ I+S E
Sbjct: 93 NEVLRAVELILSKL--LSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEE 150
Query: 156 TGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHL 199
+ A +++ D SY ++RIV V G + ++ ++ +V L
Sbjct: 151 SQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 27/169 (15%)
Query: 42 RIIVPVLKVGSIIGRKGELIKKTCEETRARIRV---LDAPLGTPDRIVLVSGKEEPEAPL 98
+I +P +VG +IG+ GE IK ++ A+I+V +DA + R+V + G +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPD----- 143
Query: 99 SPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVAST-------QAIN-----LIGKQG 146
A+ + ++ V LAE EA GA+ R +VA + Q N +IGK G
Sbjct: 144 --AVSSAEKLINEV--LAEAEA--GASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGG 197
Query: 147 SLIKSIQESTGAAVRVLTGDELPSYAAADERIVEVQGEPLKVLKALEAV 195
IK +Q STGA ++V+ P + ER +++ G P ++ A + V
Sbjct: 198 ETIKGMQASTGARIQVIPLHPPPG-DTSTERTLKIDGTPDQIESAKQLV 245