Miyakogusa Predicted Gene

Lj4g3v2121810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2121810.1 tr|Q66KP7|Q66KP7_XENLA MGC85550 protein
OS=Xenopus laevis GN=rps28p9 PE=4 SV=1,77.05,2e-19,no
description,Nucleic acid-binding, OB-fold; seg,NULL;
RIBOSOMAL_S28E,Ribosomal protein S28e; 40S R,93501_g.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g013210.1 | 40S ribosomal protein S28-1 | HC | chr6:415341...   102   7e-23
Medtr4g081180.1 | 40S ribosomal protein S28-1 | HC | chr4:314352...    92   1e-19
Medtr8g089765.1 | 40S ribosomal protein S28-1 | HC | chr8:373980...    87   3e-18
Medtr6g013410.1 | 40S ribosomal protein S28-1 | HC | chr6:423779...    80   5e-16

>Medtr6g013210.1 | 40S ribosomal protein S28-1 | HC |
          chr6:4153412-4155190 | 20130731
          Length = 65

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 51/51 (100%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51
          MESQ+KHA+VVK+MGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51


>Medtr4g081180.1 | 40S ribosomal protein S28-1 | HC |
           chr4:31435216-31431311 | 20130731
          Length = 214

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 48/50 (96%)

Query: 1   MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGD 50
           M+SQ+K+A+VVK++GRTGSRGQVTQVRVKF DD NRHIMRNVKGPVREGD
Sbjct: 150 MDSQIKNAVVVKVIGRTGSRGQVTQVRVKFNDDSNRHIMRNVKGPVREGD 199


>Medtr8g089765.1 | 40S ribosomal protein S28-1 | HC |
          chr8:37398038-37397340 | 20130731
          Length = 107

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREG 49
          M+SQ+KHAI VK+MGRTGSRGQV QVRVKF DD NRHIM NVKGPVRE 
Sbjct: 1  MDSQIKHAIAVKVMGRTGSRGQVIQVRVKFTDDTNRHIMTNVKGPVREA 49


>Medtr6g013410.1 | 40S ribosomal protein S28-1 | HC |
          chr6:4237790-4236001 | 20130731
          Length = 101

 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 46/51 (90%), Gaps = 1/51 (1%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51
          MESQ+KHA V K+MGRTGSRGQVTQVRVK L + NR+IMRNVKGP+R+GD+
Sbjct: 38 MESQIKHAQVEKVMGRTGSRGQVTQVRVKILHE-NRYIMRNVKGPIRKGDV 87