Miyakogusa Predicted Gene
- Lj4g3v2120640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2120640.1 tr|B9HP49|B9HP49_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1088155 PE=4
SV=1,35.23,3e-18,VHP,Villin headpiece; HP,Villin headpiece; VILLIN
1-4,NULL; VILLIN,Gelsolin; VHP, Villin headpiece d,CUFF.50287.1
(188 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g127660.1 | actin filament bundling protein P-115-ABP | HC... 283 6e-77
Medtr2g036860.1 | actin filament bundling protein P-115-ABP | HC... 248 3e-66
Medtr2g036860.2 | actin filament bundling protein P-115-ABP | HC... 248 3e-66
Medtr3g463530.1 | actin filament bundling protein P-115-ABP | HC... 95 4e-20
Medtr7g091460.2 | villin | HC | chr7:36172160-36160645 | 20130731 62 3e-10
Medtr7g091460.1 | villin | HC | chr7:36172702-36160645 | 20130731 62 3e-10
>Medtr4g127660.1 | actin filament bundling protein P-115-ABP | HC |
chr4:53041132-53049570 | 20130731
Length = 960
Score = 283 bits (724), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 144/189 (76%), Positives = 159/189 (84%), Gaps = 4/189 (2%)
Query: 1 MSVSPDRVRVRGRSPAFNALAANFENTNARNLSTPPPIIRKLYPKSMSPDTAKLGPKSSA 60
MSVSPDRVRVRGRSPAFNALAA FEN+N RNLSTPPP+IRKLYPKS +PD A L PKSSA
Sbjct: 775 MSVSPDRVRVRGRSPAFNALAATFENSNVRNLSTPPPMIRKLYPKSKTPDLATLAPKSSA 834
Query: 61 IASISSTFEPPSAREKLIPRSLKASSGASKSDPEI-SEKDDSMSSTTESPNVQGDVKEGE 119
I+ ++STFEPPSAREKLIPRSLK + SKS+PE S+ ++S S ES +Q DV EGE
Sbjct: 835 ISHLTSTFEPPSAREKLIPRSLKDT---SKSNPETNSDNENSTGSREESLTIQEDVNEGE 891
Query: 120 AEDDEGLPVYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQN 179
ED+EGLPVYPYESV TDSTDP DIDVTKREAYLSPEEFQ+ LGMT+ EF KLPKWKQN
Sbjct: 892 PEDNEGLPVYPYESVKTDSTDPMPDIDVTKREAYLSPEEFQERLGMTRSEFYKLPKWKQN 951
Query: 180 KLKMAVNLF 188
KLKMAV LF
Sbjct: 952 KLKMAVQLF 960
>Medtr2g036860.1 | actin filament bundling protein P-115-ABP | HC |
chr2:15969223-15955481 | 20130731
Length = 962
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Query: 3 VSPDRVRVRGRSPAFNALAANFENTNARNLSTPPPIIRKLYPKSMSPDTAKLGPKSSAIA 62
VSPDRVRVRGRSPAFNALAA FE+ RNLSTPPP+IRKLYPKS +PD+A L KS AIA
Sbjct: 776 VSPDRVRVRGRSPAFNALAATFESPGGRNLSTPPPVIRKLYPKSTTPDSAILASKSKAIA 835
Query: 63 SISSTFE-PPSAREKLIPRSLKASSGASKSDPEISEKDDSMSSTTESPNVQGDVKEGEAE 121
+++S+FE PPSARE +IPRS+K S KS+PE ++K++S+S ES ++ DVKEGEAE
Sbjct: 836 ALTSSFEQPPSARETMIPRSVKVSPVTPKSNPEKNDKENSVSGRVESLTIEEDVKEGEAE 895
Query: 122 DDEGLPVYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKL 181
D+EGL +YPYE + STDP DIDVTKRE YLS EF++ GM+K F KLPKWKQNKL
Sbjct: 896 DEEGLLIYPYERLKITSTDPVPDIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKL 955
Query: 182 KMAVNLF 188
KMA+ LF
Sbjct: 956 KMAIQLF 962
>Medtr2g036860.2 | actin filament bundling protein P-115-ABP | HC |
chr2:15969212-15955553 | 20130731
Length = 962
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Query: 3 VSPDRVRVRGRSPAFNALAANFENTNARNLSTPPPIIRKLYPKSMSPDTAKLGPKSSAIA 62
VSPDRVRVRGRSPAFNALAA FE+ RNLSTPPP+IRKLYPKS +PD+A L KS AIA
Sbjct: 776 VSPDRVRVRGRSPAFNALAATFESPGGRNLSTPPPVIRKLYPKSTTPDSAILASKSKAIA 835
Query: 63 SISSTFE-PPSAREKLIPRSLKASSGASKSDPEISEKDDSMSSTTESPNVQGDVKEGEAE 121
+++S+FE PPSARE +IPRS+K S KS+PE ++K++S+S ES ++ DVKEGEAE
Sbjct: 836 ALTSSFEQPPSARETMIPRSVKVSPVTPKSNPEKNDKENSVSGRVESLTIEEDVKEGEAE 895
Query: 122 DDEGLPVYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKL 181
D+EGL +YPYE + STDP DIDVTKRE YLS EF++ GM+K F KLPKWKQNKL
Sbjct: 896 DEEGLLIYPYERLKITSTDPVPDIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKL 955
Query: 182 KMAVNLF 188
KMA+ LF
Sbjct: 956 KMAIQLF 962
>Medtr3g463530.1 | actin filament bundling protein P-115-ABP | HC |
chr3:25453386-25461095 | 20130731
Length = 884
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 28/162 (17%)
Query: 27 TNARNLSTPPPIIRKLYPKSMSPDTAKLGPKSSAIASISSTFEPPSAREKLIPRSLKASS 86
+N R S+ P P+S D +LG + + P A +KL+ S +S
Sbjct: 751 SNGRRRSSSP------LPRSAGSDYRQLGNRRFS--------SPTPAAKKLLEESPANNS 796
Query: 87 GASKSDPEISEKDDSMSSTTESPNVQGDVKEGEAEDDEGLPVYPYESVNTDSTDPATDID 146
A+ E+S +++ S T + NV DDE L +YPYE + S +P T I+
Sbjct: 797 AAT----ELSSSNETASLTEKDKNV----------DDESLSIYPYEQLRVVSPNPVTGIN 842
Query: 147 VTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKLKMAVNLF 188
+TKREAYLS EEF + GM K F KLP+WKQNKLKM+++LF
Sbjct: 843 LTKREAYLSHEEFHEKFGMPKSAFYKLPRWKQNKLKMSLDLF 884
>Medtr7g091460.2 | villin | HC | chr7:36172160-36160645 | 20130731
Length = 983
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 128 VYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKLKMAVNL 187
V+ YE + S + +D+ +RE YLS EEF+ M K+ F KLP+WKQ+ LK V+L
Sbjct: 923 VFTYEQLKAKSGSDLSGVDLKRRETYLSDEEFETVFAMKKEAFTKLPRWKQDMLKRKVDL 982
Query: 188 F 188
F
Sbjct: 983 F 983
>Medtr7g091460.1 | villin | HC | chr7:36172702-36160645 | 20130731
Length = 983
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 128 VYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKLKMAVNL 187
V+ YE + S + +D+ +RE YLS EEF+ M K+ F KLP+WKQ+ LK V+L
Sbjct: 923 VFTYEQLKAKSGSDLSGVDLKRRETYLSDEEFETVFAMKKEAFTKLPRWKQDMLKRKVDL 982
Query: 188 F 188
F
Sbjct: 983 F 983