Miyakogusa Predicted Gene

Lj4g3v2120520.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120520.1 Non Characterized Hit- tr|J3MH55|J3MH55_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G3,61.18,0.00000000000009,seg,NULL; DUF1517,Protein of unknown
function DUF1517,CUFF.50273.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127690.1 | transmembrane protein, putative | HC | chr4:53...   113   1e-25

>Medtr4g127690.1 | transmembrane protein, putative | HC |
           chr4:53066833-53064379 | 20130731
          Length = 196

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 73/129 (56%), Gaps = 2/129 (1%)

Query: 59  NENKXXXXXXXXXXXXXXXXGSVHDASAAKSGGRIGGQSFKSSAPR-SAPRI-NNKSRTN 116
           NENK                GSVHDASAAK+GGRIGGQSF+SSAPR S+PRI NN SRTN
Sbjct: 56  NENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTN 115

Query: 117 IYVNPRVAPPLXXXXXXXXXXXXXXXXXXXXFSFFXXXXXXXXXXXXXFDTIVLFMLLGA 176
           IY+NPRVAPPL                    FSFF             FDT++LFM  GA
Sbjct: 116 IYINPRVAPPLVGGYGYGGGYGYGGGWGWSPFSFFAPGPSVAVGVGGGFDTLLLFMFFGA 175

Query: 177 GAAVVRRFF 185
            AAVVR+F 
Sbjct: 176 AAAVVRKFL 184