Miyakogusa Predicted Gene

Lj4g3v2120410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120410.1 tr|G7JUE1|G7JUE1_MEDTR WD repeat-containing
protein OS=Medicago truncatula GN=MTR_4g127820 PE=4
SV=1,74.41,0,seg,NULL; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; TRANSDUCIN
FAMI,CUFF.50264.1
         (801 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127820.1 | transducin/WD-like repeat-protein | HC | chr4:...  1155   0.0  
Medtr4g127820.2 | transducin/WD-like repeat-protein | HC | chr4:...   967   0.0  

>Medtr4g127820.1 | transducin/WD-like repeat-protein | HC |
           chr4:53157953-53165754 | 20130731
          Length = 788

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/801 (70%), Positives = 638/801 (79%), Gaps = 13/801 (1%)

Query: 1   MKGGQTYVSSPPSFSNDGKRLLVCSGCSVAVFSTATALQVSALEGHTAAVTSIVVVPAPN 60
           MKGGQ+YVS  PSFSN G RLLV SG SVA+FST TALQVS+L+GHT  VTS++VVP  N
Sbjct: 1   MKGGQSYVSCSPSFSNSGDRLLVGSGTSVAIFSTTTALQVSSLDGHTDTVTSVIVVPGSN 60

Query: 61  SVLSYCWTSSLDGTIRYWDFFLSECIKTLDLGFPIYSMVIPAILSPPEENNARQPNVFAY 120
            +++YCWTSSLDGTIR+WDF L +CIK +DL  PI+SMVIP++LSP EE + ++   FAY
Sbjct: 61  -IVTYCWTSSLDGTIRHWDFSLLKCIKIIDLKLPIFSMVIPSLLSPEEEISEKKH--FAY 117

Query: 121 VSVQDENAQDNRPKPRRGQIRKCNLTNYHAISNHILKETERPESLTICPSGKFLGIKDKR 180
           V +Q  N +DNRPK    QIRKCNLT++H +S   LKET++P  L + P GKFLGIK+KR
Sbjct: 118 VCMQTGNEKDNRPKLCSAQIRKCNLTDFHKLSTITLKETKKPHPLIVSPCGKFLGIKEKR 177

Query: 181 KLHIWKIPKMDSDSAVLKKITLHHTKTFTALAFHPTERIVAAGDVTGRILIWRGFGTHKF 240
            LHIWK+PK+DS+SAV KKI+LHHTKTF+ LAFHPTERIVAAGDVTGRILI+RGFG   F
Sbjct: 178 TLHIWKVPKVDSNSAVSKKISLHHTKTFSVLAFHPTERIVAAGDVTGRILIFRGFGAKNF 237

Query: 241 QDNSGLLNTRSMNDEEDKPGVRDNDDAESCSTWHWHSAGVRHLSFSSDGAYLYSGGKEGV 300
           Q+N  LLN  SM DEE KPGVR NDDAESCSTWHWHS  V  LSFSSDG YLYSGGKEGV
Sbjct: 238 QENDVLLNRTSMTDEECKPGVRQNDDAESCSTWHWHSDAVNLLSFSSDGVYLYSGGKEGV 297

Query: 301 LVLWQLDTGKKTFLPRIGSPLLYFVDSTDPSLSSISCADNQIHILKTPSMEIMRSISGIK 360
           LVLWQLDTGKK FLPRIGSPL YFVDS DPS +SISCADNQIHILK  S+EIMRSISGIK
Sbjct: 298 LVLWQLDTGKKKFLPRIGSPLRYFVDSLDPSFASISCADNQIHILKISSVEIMRSISGIK 357

Query: 361 XXXXXXXXXXXXXXRAAFDCSSGLVAVQTENYGIQFYSLFGDRGLYEVQVCERNHQXXXX 420
                         +AAFD SSGLVAVQT+NYGIQFYSLF +RGLYEVQVCERN+Q    
Sbjct: 358 PPLSSQETCESISSQAAFDRSSGLVAVQTDNYGIQFYSLFANRGLYEVQVCERNYQPVDE 417

Query: 421 XXXXXXXXXXXXXXXIMCTVEVKLPEEGIGGLICLKFWDLDSDSKRFSVSTLIYEPHRDA 480
                          +M TVEVKLPEEGIGGLICLKFWDLDSD+KRFS+STL+YEPHRDA
Sbjct: 418 VTVVVTMVELSTDGSMMGTVEVKLPEEGIGGLICLKFWDLDSDTKRFSMSTLVYEPHRDA 477

Query: 481 HISSVAFHPTCHMAVSSSYGGDFKIWVCKEESQQKGKMLQTSSWMCHAVGSYKNKAMRAA 540
           HIS++ FHPTC MAVS+SYGGDFKIWVC+EE+QQK +  +  SWMCHAVGSYKNKAMRAA
Sbjct: 478 HISAITFHPTCRMAVSTSYGGDFKIWVCREETQQKDQTHRNFSWMCHAVGSYKNKAMRAA 537

Query: 541 AFSADGSVLAVAADTVITLWDPDKNVLIAVVGETPTPIDRLNFAGKSEYLLSVSHGSNPQ 600
           AFSADGSVLAVAADTVITLWD DKN LIAVVGETP+PI RL F G SEYLLSVS+GS PQ
Sbjct: 538 AFSADGSVLAVAADTVITLWDHDKNELIAVVGETPSPIGRLIFVGNSEYLLSVSYGSTPQ 597

Query: 601 XXXXXXXXXXXXXXXXXQVEAVSCSMDLSFFAVLALLPKSNERTFRSDGIILLFNATDPI 660
                            Q+EAVSC++DLS+FA++AL+PKS ER F+ DGIIL+FNATDPI
Sbjct: 598 LSVWSMSKLAASWSYRIQIEAVSCALDLSYFAIIALIPKSKERLFKGDGIILVFNATDPI 657

Query: 661 PVASWSVAKAKGGGLAFIKGNSSELAITDGKPLQTLLAYINGDREYVLFDPNDKESCERS 720
           PVASWSV KAKGG +AFIKG +S          QTLLAY+NGDREYVLFDP DKE+ E +
Sbjct: 658 PVASWSVTKAKGGSIAFIKGKTS----------QTLLAYLNGDREYVLFDPYDKEAHELN 707

Query: 721 MNRQEDLAAFEETGQIGYTSIYGELPAFDFKRNKASSVFSGASERPWETIFSGSSHMLPP 780
           M  ++DL   EE GQ GYTSIY ELPAF+ KRNK SSVFSG S RPWETIFSGSSHMLPP
Sbjct: 708 MTMEDDLVGLEENGQFGYTSIYPELPAFELKRNKTSSVFSGVSNRPWETIFSGSSHMLPP 767

Query: 781 LTKLCSEFLESLLEKRTTTVE 801
           LTKLCSEF+ESL+EKRT+ VE
Sbjct: 768 LTKLCSEFMESLMEKRTSMVE 788


>Medtr4g127820.2 | transducin/WD-like repeat-protein | HC |
           chr4:53157953-53164324 | 20130731
          Length = 670

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/670 (70%), Positives = 534/670 (79%), Gaps = 3/670 (0%)

Query: 1   MKGGQTYVSSPPSFSNDGKRLLVCSGCSVAVFSTATALQVSALEGHTAAVTSIVVVPAPN 60
           MKGGQ+YVS  PSFSN G RLLV SG SVA+FST TALQVS+L+GHT  VTS++VVP  N
Sbjct: 1   MKGGQSYVSCSPSFSNSGDRLLVGSGTSVAIFSTTTALQVSSLDGHTDTVTSVIVVPGSN 60

Query: 61  SVLSYCWTSSLDGTIRYWDFFLSECIKTLDLGFPIYSMVIPAILSPPEENNARQPNVFAY 120
            +++YCWTSSLDGTIR+WDF L +CIK +DL  PI+SMVIP++LSP EE + ++   FAY
Sbjct: 61  -IVTYCWTSSLDGTIRHWDFSLLKCIKIIDLKLPIFSMVIPSLLSPEEEISEKKH--FAY 117

Query: 121 VSVQDENAQDNRPKPRRGQIRKCNLTNYHAISNHILKETERPESLTICPSGKFLGIKDKR 180
           V +Q  N +DNRPK    QIRKCNLT++H +S   LKET++P  L + P GKFLGIK+KR
Sbjct: 118 VCMQTGNEKDNRPKLCSAQIRKCNLTDFHKLSTITLKETKKPHPLIVSPCGKFLGIKEKR 177

Query: 181 KLHIWKIPKMDSDSAVLKKITLHHTKTFTALAFHPTERIVAAGDVTGRILIWRGFGTHKF 240
            LHIWK+PK+DS+SAV KKI+LHHTKTF+ LAFHPTERIVAAGDVTGRILI+RGFG   F
Sbjct: 178 TLHIWKVPKVDSNSAVSKKISLHHTKTFSVLAFHPTERIVAAGDVTGRILIFRGFGAKNF 237

Query: 241 QDNSGLLNTRSMNDEEDKPGVRDNDDAESCSTWHWHSAGVRHLSFSSDGAYLYSGGKEGV 300
           Q+N  LLN  SM DEE KPGVR NDDAESCSTWHWHS  V  LSFSSDG YLYSGGKEGV
Sbjct: 238 QENDVLLNRTSMTDEECKPGVRQNDDAESCSTWHWHSDAVNLLSFSSDGVYLYSGGKEGV 297

Query: 301 LVLWQLDTGKKTFLPRIGSPLLYFVDSTDPSLSSISCADNQIHILKTPSMEIMRSISGIK 360
           LVLWQLDTGKK FLPRIGSPL YFVDS DPS +SISCADNQIHILK  S+EIMRSISGIK
Sbjct: 298 LVLWQLDTGKKKFLPRIGSPLRYFVDSLDPSFASISCADNQIHILKISSVEIMRSISGIK 357

Query: 361 XXXXXXXXXXXXXXRAAFDCSSGLVAVQTENYGIQFYSLFGDRGLYEVQVCERNHQXXXX 420
                         +AAFD SSGLVAVQT+NYGIQFYSLF +RGLYEVQVCERN+Q    
Sbjct: 358 PPLSSQETCESISSQAAFDRSSGLVAVQTDNYGIQFYSLFANRGLYEVQVCERNYQPVDE 417

Query: 421 XXXXXXXXXXXXXXXIMCTVEVKLPEEGIGGLICLKFWDLDSDSKRFSVSTLIYEPHRDA 480
                          +M TVEVKLPEEGIGGLICLKFWDLDSD+KRFS+STL+YEPHRDA
Sbjct: 418 VTVVVTMVELSTDGSMMGTVEVKLPEEGIGGLICLKFWDLDSDTKRFSMSTLVYEPHRDA 477

Query: 481 HISSVAFHPTCHMAVSSSYGGDFKIWVCKEESQQKGKMLQTSSWMCHAVGSYKNKAMRAA 540
           HIS++ FHPTC MAVS+SYGGDFKIWVC+EE+QQK +  +  SWMCHAVGSYKNKAMRAA
Sbjct: 478 HISAITFHPTCRMAVSTSYGGDFKIWVCREETQQKDQTHRNFSWMCHAVGSYKNKAMRAA 537

Query: 541 AFSADGSVLAVAADTVITLWDPDKNVLIAVVGETPTPIDRLNFAGKSEYLLSVSHGSNPQ 600
           AFSADGSVLAVAADTVITLWD DKN LIAVVGETP+PI RL F G SEYLLSVS+GS PQ
Sbjct: 538 AFSADGSVLAVAADTVITLWDHDKNELIAVVGETPSPIGRLIFVGNSEYLLSVSYGSTPQ 597

Query: 601 XXXXXXXXXXXXXXXXXQVEAVSCSMDLSFFAVLALLPKSNERTFRSDGIILLFNATDPI 660
                            Q+EAVSC++DLS+FA++AL+PKS ER F+ DGIIL+FNATDPI
Sbjct: 598 LSVWSMSKLAASWSYRIQIEAVSCALDLSYFAIIALIPKSKERLFKGDGIILVFNATDPI 657

Query: 661 PVASWSVAKA 670
           PVASWSV K 
Sbjct: 658 PVASWSVTKV 667