Miyakogusa Predicted Gene

Lj4g3v2120380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120380.1 tr|F2CQT6|F2CQT6_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,81.82,1e-18,seg,NULL;
DUF1777,Domain of unknown function DUF1777,CUFF.50255.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127860.1 | DUF1777 family protein | HC | chr4:53185885-53...   161   3e-40

>Medtr4g127860.1 | DUF1777 family protein | HC |
           chr4:53185885-53190552 | 20130731
          Length = 186

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 97/119 (81%), Gaps = 6/119 (5%)

Query: 68  TPSPDQPRKRHRRDSVEDD---HKDTKKVVSDFVDGIVKEQQQKHKXXXXXXXXXXXXXX 124
           TPSPD PRKRHRRDSV+D+   HK+TKKVVSDFVDGI KEQQQ+ +              
Sbjct: 71  TPSPDPPRKRHRRDSVDDEPKEHKETKKVVSDFVDGIAKEQQQQKQKENGEEVDVNE--- 127

Query: 125 DEAEMMKMLGIPTGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAEKNR 183
           DE EMMKM+GIP GFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAEKNR
Sbjct: 128 DEIEMMKMMGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAEKNR 186