Miyakogusa Predicted Gene

Lj4g3v2120370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120370.1 tr|I3S2B8|I3S2B8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2 SV=1,99.42,0,Ribulose
bisphosphate carboxylase, smal,Ribulose bisphosphate carboxylase small
chain, domain; RuBis,CUFF.50254.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain ...   290   3e-79
Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain ...   195   2e-50
Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain ...   193   8e-50
Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain ...   193   8e-50
Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain ...   192   9e-50
Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain ...   192   1e-49
Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain ...   192   1e-49
Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain ...   191   3e-49
Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain ...   190   7e-49
Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain ...   181   3e-46

>Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr4:53193172-53191727 | 20130731
          Length = 173

 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 148/172 (86%), Gaps = 1/172 (0%)

Query: 1   MSAGTFTALVAGAGFVGLKSNSSNLYPVTGFN-EWKSKTTSNGSKTLCMKTWNPINNRKF 59
           MSAGTF A VAG GFVGLKSNSS+L+P   ++ EWK KT SNGSK  CMKTWNPINN+KF
Sbjct: 1   MSAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKF 60

Query: 60  ETLSYLPPLTDESIAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLP 119
           ETLSYLPPL+D+SIAKE+DYMLKK W PCLEFDE G I R NS+MPGYYDGRYWTLWKLP
Sbjct: 61  ETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLP 120

Query: 120 MFGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANTT 171
           MFGCNDSSQVLNEI ECK+ YPNAYIRC+AFDN RHMQ+MAF+I KP   TT
Sbjct: 121 MFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFVIHKPTTTTT 172


>Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349845-1351124 | 20130731
          Length = 181

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 114/159 (71%), Gaps = 3/159 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +PVT  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAA 168
           L E+ E   AYPNA++R I FDN R +Q ++FI   PA 
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPAV 180


>Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349854-1358991 | 20130731
          Length = 181

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 113/157 (71%), Gaps = 3/157 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +PVT  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           L E+ E   AYPNA++R I FDN R +Q ++FI   P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178


>Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1389672-1390718 | 20130731
          Length = 181

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 113/157 (71%), Gaps = 3/157 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +PVT  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           L E+ E   AYPNA++R I FDN R +Q ++FI   P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178


>Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1357852-1358991 | 20130731
          Length = 181

 Score =  192 bits (489), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 113/157 (71%), Gaps = 3/157 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +PVT  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           L E+ E   AYPNA++R I FDN R +Q ++FI   P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178


>Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7009014-7010704 | 20130731
          Length = 180

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 4/157 (2%)

Query: 13  AGFVGLKSNSSNLYPVTG-FNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS+++  +PVT   N   +   SNG +  CM+ W PI  +KFETLSYLPPLT+E
Sbjct: 24  APFTGLKSSAA--FPVTKKTNNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTEE 81

Query: 72  SIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVL 130
            +AKEV+Y+++KGW+PCLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  DSSQVL
Sbjct: 82  QLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVL 141

Query: 131 NEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPA 167
            E+ E K AYP ++IR I FDN R +Q ++FI   PA
Sbjct: 142 KELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPA 178


>Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1373181-1374551 | 20130731
          Length = 181

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 113/157 (71%), Gaps = 3/157 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +P+T  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           L E+ E   AYPNA++R I FDN R +Q ++FI   P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178


>Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7006187-7007659 | 20130731
          Length = 177

 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 4/157 (2%)

Query: 13  AGFVGLKSNSSNLYPVTG-FNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS++   +PVT   N   +  TSNG +  CM+ W PI  +KFETLSYLPPLT++
Sbjct: 21  APFTGLKSSAG--FPVTKKTNNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTED 78

Query: 72  SIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVL 130
            +AKEV+Y+++KGW+PCLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  DSSQVL
Sbjct: 79  QLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVL 138

Query: 131 NEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPA 167
            E+ E K AYP ++IR I FDN R +Q ++FI   PA
Sbjct: 139 KELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPA 175


>Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1393512-1395086 | 20130731
          Length = 181

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 112/157 (71%), Gaps = 3/157 (1%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +P+T  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKP 166
           L E+ E   AYPNA++R I FD  R +Q ++FI   P
Sbjct: 142 LKELDEVVDAYPNAFVRIIGFDKVRQVQCISFIAHTP 178


>Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1383567-1386475 | 20130731
          Length = 192

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 105/143 (73%), Gaps = 3/143 (2%)

Query: 11  AGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTD 70
           A A FVGLKS +   +PVT  N+  +  TSNG +  CM+ W PI  +KFETLSYLPPLT 
Sbjct: 24  AVAPFVGLKSMAG--FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81

Query: 71  ESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQV 129
           E +AKEV+Y+++KGW+ CLEF+ E G + REN   PGYYDGRYWT+WKLP+FG  D+SQV
Sbjct: 82  EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141

Query: 130 LNEIQECKRAYPNAYIRCIAFDN 152
           L E+ E   AYPNA++R I FDN
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDN 164