Miyakogusa Predicted Gene

Lj4g3v2094890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2094890.1 Non Characterized Hit- tr|C5YJI7|C5YJI7_SORBI
Putative uncharacterized protein Sb07g007800
OS=Sorghu,33.54,0.0000000004,seg,NULL,CUFF.50241.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g128240.1 | rubisco methyltransferase family protein | HC ...   206   9e-54

>Medtr4g128240.1 | rubisco methyltransferase family protein | HC |
           chr4:53384921-53373038 | 20130731
          Length = 639

 Score =  206 bits (524), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 130/167 (77%), Gaps = 3/167 (1%)

Query: 1   MDTDEVCSIVLELSEXXXXXXXXXXXXQCKGFSPKERIYLN-SSESGWENATAKRLLEIE 59
           MD+DE CS+VLELSE            +CKGF PKERI+L  SS   W N T K LL+I 
Sbjct: 93  MDSDEECSLVLELSENDPFFDEKKKLLRCKGFGPKERIHLKCSSAPSWMNDTVKILLQIA 152

Query: 60  RIIQLNELELYFAEDNGCTSVDFYSPRNELEALNSVVFLIDISLSSCSHLHTNILQGLRQ 119
           +IIQLNELELYFAED+   SV+FYS RNELEALNS+V L D SLSSC H HTN+LQGL+Q
Sbjct: 153 KIIQLNELELYFAEDDA--SVEFYSSRNELEALNSIVSLTDKSLSSCPHFHTNVLQGLQQ 210

Query: 120 TMLDLISDFGDKNSVKGVVEIDHNCDQEEHMIEWGESNGLKTQLKIA 166
            +LDLISDFGD++++KGV+E  H+C++EEH+IEWG+S+G+KT LKIA
Sbjct: 211 KILDLISDFGDQSNMKGVLEKHHSCEREEHLIEWGKSHGVKTGLKIA 257