Miyakogusa Predicted Gene

Lj4g3v2093730.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2093730.1 Non Characterized Hit- tr|C5XQN4|C5XQN4_SORBI
Putative uncharacterized protein Sb03g040990
OS=Sorghu,80.22,0,Yip1,Yip1 domain; seg,NULL; YIP1-RELATED,NULL; GOLGI
MEMBRANE PROTEIN YIP1,NULL,CUFF.50240.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g128290.1 | integral membrane Yip1-family protein | HC | c...   370   e-102

>Medtr4g128290.1 | integral membrane Yip1-family protein | HC |
           chr4:53416187-53412714 | 20130731
          Length = 281

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/281 (75%), Positives = 214/281 (76%), Gaps = 5/281 (1%)

Query: 1   MSHGDTIPLHPSSQSDIDEIENLIYASPATVLXXXXXXXXXXXIPVT--TSSPFINSNLP 58
           MSH DTIPLH SSQSDIDEIENLIYASPATVL           IPVT  TSSPFINSNLP
Sbjct: 1   MSHSDTIPLHASSQSDIDEIENLIYASPATVLPARPPSPPRASIPVTSSTSSPFINSNLP 60

Query: 59  APLPPKSSIXXXXXXXXXXXXXXXXXXXXXXX---XSSGFGPAPNTLTEPVWDTVKRDLS 115
            P PPKSS                            +SGFGPAPNTLTEPVWDTVKRDLS
Sbjct: 61  NPAPPKSSSLPSLPKPPSSSLPPLPPPPSSTRPDISTSGFGPAPNTLTEPVWDTVKRDLS 120

Query: 116 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLILSWSASVKKSEXXXXXXXX 175
           RIVSNLKLVVFPNP REDPGKALRDWDLWGPFFFIVFLGL LSWSASVKKSE        
Sbjct: 121 RIVSNLKLVVFPNPNREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 180

Query: 176 XXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVILKXXXXXXTLA 235
                 ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLK+NVI+K      TLA
Sbjct: 181 LAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKNNVIVKVVVVCVTLA 240

Query: 236 WSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 276
           WSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Sbjct: 241 WSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 281