Miyakogusa Predicted Gene

Lj4g3v2046240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2046240.1 Non Characterized Hit- tr|Q5J7B4|Q5J7B4_GINBI
Putative 1-D-deoxyxylulose 5-phosphate synthase
OS=Gin,78.57,0.000002,Thiamin diphosphate-binding fold
(THDP-binding),NULL; DXP_synthase_N,Deoxyxylulose-5-phosphate
synth,CUFF.50184.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g068265.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   171   2e-43
Medtr8g068300.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   170   4e-43
Medtr4g118640.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   168   1e-42
Medtr2g020590.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   138   1e-33
Medtr4g118640.3 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   137   4e-33
Medtr4g118640.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   136   4e-33
Medtr3g107740.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   107   3e-24
Medtr3g107740.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...   107   3e-24

>Medtr8g068265.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr8:28466086-28471025 | 20130731
          Length = 711

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 110/182 (60%), Gaps = 55/182 (30%)

Query: 4   ERYQTNQQLPRKPLSFSGEKPSTPILDTINYPIHMKNLSIQ------------------- 44
           ER    ++     ++FS EKP TP+LDT+N+P+HMKNL+ +                   
Sbjct: 44  ERTIIRKEKDEWKINFSAEKPPTPLLDTVNFPVHMKNLTTEDLEQLAAELRADIVHSVSD 103

Query: 45  TYGH------------------------------------KILTGRRSKMHSIRQTDGLA 68
           T GH                                    KILTGRRS+MH+IR+T GLA
Sbjct: 104 TGGHLSSSLGVVELSVALHHVFDTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLA 163

Query: 69  GFPKRDESVHDAFGVGHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMN 128
           GFPKRDESVHDAFGVGHSSTSISA LGMAVARDL+ K+N V+SVIGDGAMTAGQAYEAMN
Sbjct: 164 GFPKRDESVHDAFGVGHSSTSISAGLGMAVARDLLGKKNSVISVIGDGAMTAGQAYEAMN 223

Query: 129 NA 130
           NA
Sbjct: 224 NA 225


>Medtr8g068300.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr8:28474611-28479112 | 20130731
          Length = 710

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 111/183 (60%), Gaps = 55/183 (30%)

Query: 3   KERYQTNQQLPRKPLSFSGEKPSTPILDTINYPIHMKNLSIQ------------------ 44
           +ER    ++     ++FS EKP TP+LDT+N+P+HMKNL+ +                  
Sbjct: 43  EERTVIRKEKDEWKINFSAEKPPTPLLDTVNFPVHMKNLTTEDLEQLAAELRADIVHSVS 102

Query: 45  -TYGH------------------------------------KILTGRRSKMHSIRQTDGL 67
            T GH                                    KILTGRRS+MH+IR+T GL
Sbjct: 103 DTGGHLSSSLGVVELSVALHHVFDTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGL 162

Query: 68  AGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAM 127
           AGFPKRDESVHDAFGVGHSSTSISA LGMA+ARDL+ K+N V+SVIGDGAMTAGQAYEA+
Sbjct: 163 AGFPKRDESVHDAFGVGHSSTSISAGLGMAIARDLLGKKNSVISVIGDGAMTAGQAYEAL 222

Query: 128 NNA 130
           NNA
Sbjct: 223 NNA 225


>Medtr4g118640.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49149332 | 20130731
          Length = 672

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 97/122 (79%), Gaps = 10/122 (8%)

Query: 19  FSGEKPSTPILDTINYPIHMKNLSI----------QTYGHKILTGRRSKMHSIRQTDGLA 68
           +  ++P TP+LDTINYPIHMKNLS           Q+Y HKILTGRR KMH++RQT+GL+
Sbjct: 64  YYSQRPPTPLLDTINYPIHMKNLSTKDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLS 123

Query: 69  GFPKRDESVHDAFGVGHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMN 128
           GF KR ES +D+FG GHSST+ISA LGMAV RDL  ++N VV+VIGDGAMTAGQAYEAMN
Sbjct: 124 GFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLKGRKNDVVAVIGDGAMTAGQAYEAMN 183

Query: 129 NA 130
           NA
Sbjct: 184 NA 185


>Medtr2g020590.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr2:6870248-6863032 | 20130731
          Length = 718

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 94/164 (57%), Gaps = 55/164 (33%)

Query: 22  EKPSTPILDTINYPIHMK-------------------------------NLSI------- 43
           E+  TP+LDTINYPIHMK                               NL +       
Sbjct: 69  ERQPTPLLDTINYPIHMKNLSNKELKQLACELRSDIIFSVSQTGGHLGSNLGVVELTVAL 128

Query: 44  -----------------QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHS 86
                            Q+Y HKILTGRR+KMH++RQ DGL+GF KR ES  D FG GHS
Sbjct: 129 HYVFNAPIDKILWDVGHQSYPHKILTGRRNKMHTLRQKDGLSGFTKRSESEFDIFGTGHS 188

Query: 87  STSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMNNA 130
           ST+ISA LGMAV RDL  ++++VV++IGDGAMTAGQA+EAMNNA
Sbjct: 189 STTISAGLGMAVGRDLKGEKHNVVTIIGDGAMTAGQAFEAMNNA 232


>Medtr4g118640.3 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49148819 | 20130731
          Length = 678

 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 76/87 (87%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           Q+Y HKILTGRR KMH++RQT+GL+GF KR ES +D+FG GHSST+ISA LGMAV RDL 
Sbjct: 144 QSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLK 203

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            ++N VV+VIGDGAMTAGQAYEAMNNA
Sbjct: 204 GRKNDVVAVIGDGAMTAGQAYEAMNNA 230


>Medtr4g118640.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49149426 | 20130731
          Length = 717

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 76/87 (87%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           Q+Y HKILTGRR KMH++RQT+GL+GF KR ES +D+FG GHSST+ISA LGMAV RDL 
Sbjct: 144 QSYPHKILTGRRDKMHTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAGLGMAVGRDLK 203

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            ++N VV+VIGDGAMTAGQAYEAMNNA
Sbjct: 204 GRKNDVVAVIGDGAMTAGQAYEAMNNA 230


>Medtr3g107740.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr3:49718014-49711963 | 20130731
          Length = 574

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 63/87 (72%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           QTY HKILTGRRS M +IR+ +GL+GF  R ES +DAFG GH   SISA LGMAVARD+ 
Sbjct: 138 QTYAHKILTGRRSLMKTIRKKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIK 197

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            +   VV+VI +    +GQ YEAM+NA
Sbjct: 198 GRRERVVAVISNWTTMSGQVYEAMSNA 224


>Medtr3g107740.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr3:49718037-49711963 | 20130731
          Length = 708

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 63/87 (72%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           QTY HKILTGRRS M +IR+ +GL+GF  R ES +DAFG GH   SISA LGMAVARD+ 
Sbjct: 138 QTYAHKILTGRRSLMKTIRKKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIK 197

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            +   VV+VI +    +GQ YEAM+NA
Sbjct: 198 GRRERVVAVISNWTTMSGQVYEAMSNA 224