Miyakogusa Predicted Gene

Lj4g3v2023890.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2023890.1 tr|B9IM52|B9IM52_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_578659 PE=4
SV=1,50,0.00000000009,seg,NULL,CUFF.50166.1
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g129330.1 | transmembrane protein, putative | HC | chr4:53...   251   4e-67
Medtr1g116000.1 | transmembrane protein, putative | HC | chr1:52...   160   1e-39

>Medtr4g129330.1 | transmembrane protein, putative | HC |
           chr4:53878983-53877788 | 20130731
          Length = 298

 Score =  251 bits (642), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 175/295 (59%), Gaps = 8/295 (2%)

Query: 1   MCESEGVLLSW-CRVSLSPLKLIFESLQILSSNPLPFXXXXXXXXXXXXXXXXXXXXXXQ 59
           MC++  V   W C    +P K++F SLQIL++N   F                       
Sbjct: 1   MCDAGAV---WRC---FTPFKILFNSLQILTTNKFLFTTIFLLTTLPLSILSIYQSIFTH 54

Query: 60  PLTARIHRLESLAHHAPTRFEARHVWRESRHDASSLLRVKALFAIPXXXXXXXXXXXXVH 119
            LT++I  LE+LAH A T FEARHVW ESR +A  L+R+KALF+ P            VH
Sbjct: 55  QLTSQIRHLEALAHFASTHFEARHVWHESRDNAVFLIRIKALFSFPAYVFSLIATLAAVH 114

Query: 120 STLTPAPTLHSAASALKHHSMRLSVTTIYIYALLLAFSPIPRAISALTGSPLLVFLIGSG 179
           S+L P PT++SA ++LK + MR+ VT+I++Y  L  FS +P  ++ALTGS LLV +  SG
Sbjct: 115 SSLIPTPTVNSAVASLKPNIMRVFVTSIFVYFTLFVFSSLPFFLNALTGSHLLVLIFRSG 174

Query: 180 LEVYLMXXXXXXXXXXXXEERFGWDAIRVGSGLMEGNRVCGWVXXXXXXXXXXXXXXKVE 239
           LEVYLM            EERFGW+AI+ GS LMEGNRVCG+V              ++E
Sbjct: 175 LEVYLMAVLSVGLVVSVAEERFGWEAIKTGSDLMEGNRVCGFVLSGLFVWVSSLIRWRIE 234

Query: 240 RLMDGED-SIGVEDKAVLIVSYGFMVLWSYVIMTVFYCHCRKQHPVKEAQPDPDE 293
           + MDGED S+G E+K  +IV YGF+VL SYVIMTV+Y  CRK+HP+KE     DE
Sbjct: 235 KSMDGEDSSMGFEEKVYVIVCYGFVVLLSYVIMTVYYSECRKRHPIKEFHQVDDE 289


>Medtr1g116000.1 | transmembrane protein, putative | HC |
           chr1:52420234-52419232 | 20130731
          Length = 289

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 130/234 (55%), Gaps = 9/234 (3%)

Query: 59  QPLTARIHRLESLAHHAPTRFEARHVWRESRHDASSLLRVKALFAIPXXXXXXXXXXXXV 118
             L + I+ LE+LA    T  EARHVW ESR +A  LLR++ALF +             V
Sbjct: 49  HTLRSHIYHLEALALFTSTLMEARHVWHESRDNAVYLLRIRALFLLICLPLSLAAAVSSV 108

Query: 119 HSTLT----PAPTLHSAASALKHHSMRLSVTTIYIYALLLAFSPIPRAISALTGSPLLVF 174
           H+T       + T++S  +A+K +  R  VT I++Y +L  FS +PR IS+   SP L F
Sbjct: 109 HTTYNFIQGKSVTVNSVVTAVKENWKRPFVTAIFVYVILFVFSSVPRVISSAFTSPELRF 168

Query: 175 LI---GSGLEVYLMXXXXXXXXXXXXEERFGWDAIRVGSGLMEGNR-VCGWVXXXXXXXX 230
           +I   G G EVYLM            EER G +AI VGS LM G R + GW+        
Sbjct: 169 IIMAIGFGFEVYLMGVMGLGMVVSVVEERTGLEAITVGSDLMRGKRLIFGWLLSGLFVLV 228

Query: 231 XXXXXXKVERLMDGEDS-IGVEDKAVLIVSYGFMVLWSYVIMTVFYCHCRKQHP 283
                 +VE L++G +S I V D+ +LI SYGF+V++SYV+ TVFYC+ R+Q P
Sbjct: 229 SGFMNGRVEVLLEGTNSEISVWDETILICSYGFIVVFSYVVTTVFYCYSREQQP 282