Miyakogusa Predicted Gene

Lj4g3v2021650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2021650.1 tr|I4DJI4|I4DJI4_9NEOP Cytochrome c
oxidase,-subunit VIb OS=Papilio xuthus PE=4
SV=1,57.53,3e-19,COX6B,Cytochrome c oxidase, subunit VIb; CYTOCHROME C
OXIDASE POLYPEPTIDE VIB,NULL; Cytochrome c oxi,CUFF.50153.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g129710.1 | cytochrome C oxidase, subunit VIb family prote...   150   2e-37
Medtr5g064600.1 | cytochrome C oxidase, subunit VIb family prote...   146   5e-36
Medtr5g013865.1 | cytochrome C oxidase, subunit VIb family prote...    75   2e-14

>Medtr4g129710.1 | cytochrome C oxidase, subunit VIb family
          protein | HC | chr4:54063655-54061553 | 20130731
          Length = 82

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/74 (91%), Positives = 71/74 (95%)

Query: 4  IELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVEK 63
          IELKTAPVDFRFPTTNQTRHCFTRYIEFHRC+ VKGE SGECE+FAKYYRSLCPGEWV+K
Sbjct: 9  IELKTAPVDFRFPTTNQTRHCFTRYIEFHRCMTVKGENSGECEKFAKYYRSLCPGEWVDK 68

Query: 64 WNEQRGNGTFPGPL 77
          WNEQR NGTFPGPL
Sbjct: 69 WNEQRDNGTFPGPL 82


>Medtr5g064600.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr5:27135489-27141149 | 20130731
          Length = 183

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 72/75 (96%)

Query: 3   EIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVE 62
           EI+L+TAPVDFRFPTTNQTRHCFTRYIE+HRC+A KG+++ EC++FAKYYR+LCPGEWV+
Sbjct: 109 EIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDDAPECDKFAKYYRALCPGEWVD 168

Query: 63  KWNEQRGNGTFPGPL 77
           +WNEQR NGTFPGPL
Sbjct: 169 RWNEQRENGTFPGPL 183


>Medtr5g013865.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr5:4575237-4573623 | 20130731
          Length = 133

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 7   KTAPVDFRFPTTN-QTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVEKWN 65
           +TA      P+ N QTRHC+ +Y+E+ RC+  KGE++ ECE+   + RS+CP +W+ +W+
Sbjct: 62  RTAENGSESPSNNYQTRHCYVKYVEYQRCIQQKGEKANECEKIGTHLRSMCPTKWISEWD 121

Query: 66  EQRGNGTFP 74
           ++R  G FP
Sbjct: 122 QEREEGRFP 130