Miyakogusa Predicted Gene

Lj4g3v2018290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2018290.1 tr|D3BIG1|D3BIG1_POLPA Transmembrane protein
OS=Polysphondylium pallidum GN=tmem208 PE=4 SV=1,34.5,3e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,Protein of unknown function DUF788,
TMEM208; seg,NULL; DU,CUFF.50107.1
         (174 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130180.1 | transmembrane protein | HC | chr4:54203372-542...   254   2e-68

>Medtr4g130180.1 | transmembrane protein | HC |
           chr4:54203372-54207460 | 20130731
          Length = 173

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 134/174 (77%), Gaps = 1/174 (0%)

Query: 1   MAKQGAKKRKDENARHMARLRLXXXXXXXXXXXXRMFFYYSTFTWKHWIGLVVTSLAYYV 60
           MA QGAKKRK+EN+RH+ +LR             RM  ++S+FTWKHWIGLV+TSLAYY 
Sbjct: 1   MANQGAKKRKEENSRHITKLRHIIIACNVIYLIIRMLIFHSSFTWKHWIGLVLTSLAYYF 60

Query: 61  PYQQLDKMATPSYAEDGELLDGGFDMATGGVCGYLHDIIYITCFVQVASIISGKFWYTYL 120
           PYQQL KMA PSY +DGELLDGGFDM TGGVCGYLHD+IYITCFVQVASIISGKFWY YL
Sbjct: 61  PYQQLAKMAKPSYTQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVASIISGKFWYIYL 120

Query: 121 VIPAFGAYQSFGLIKGFLPQGSSEESYXXXXXXXXXXXXXXXASRPKFVKTRTR 174
           VIPAFGAYQSFGLIKGFLPQG SEES                ASRPKFVKTRTR
Sbjct: 121 VIPAFGAYQSFGLIKGFLPQG-SEESVEDEKTRKKREKMEKKASRPKFVKTRTR 173