Miyakogusa Predicted Gene

Lj4g3v2014120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2014120.1 tr|A9STJ2|A9STJ2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_83795
,34.01,0.000000000000003,seg,NULL; SUBFAMILY NOT NAMED,NULL;
NUCLEOPORIN NUP43,NULL,CUFF.50097.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130280.1 | transducin/WD40 repeat protein | HC | chr4:542...   201   3e-52

>Medtr4g130280.1 | transducin/WD40 repeat protein | HC |
           chr4:54271347-54275261 | 20130731
          Length = 351

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 128/176 (72%), Gaps = 5/176 (2%)

Query: 1   MAVTANSETSRIHRFPQYKYIDAVRWLPLVSAFDRXXXXXXXXXXXXXXXIEIHSFKPNP 60
           MAVTANSE   IHRFPQYKYIDAVRWLP++SAF+R               IEIHSFKPNP
Sbjct: 1   MAVTANSE---IHRFPQYKYIDAVRWLPVLSAFNRFAVLATSDFDSNLSSIEIHSFKPNP 57

Query: 61  LSFEPQSSWTPPSRVSSLKAAQFLQKTVIAASTSSGSLHFLFSDPADATLESEVSVPEGK 120
           LSFE QSSWT PS +SS+K++QFLQK++IA+STSSGSLHFLF+D  DA L SEVSVPE +
Sbjct: 58  LSFEFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARLVSEVSVPENE 117

Query: 121 LHSVPKSCVDLMDGGVECVTAGEDGRVNLVTA--YGVRYRWLWVWSSMVGSEEAGW 174
           LH   K C+DLMDGGVECVT G+DGR+NLVT     + YR L+    +V      W
Sbjct: 118 LHLEGKCCIDLMDGGVECVTVGDDGRINLVTVGDSNLNYRRLFDSGGLVSYTSVKW 173