Miyakogusa Predicted Gene

Lj4g3v2003030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2003030.1 tr|A9TWE0|A9TWE0_PHYPA 50S ribosomal protein L35
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAF,63.51,1e-17,rpmI_bact: ribosomal protein L35,Ribosomal
protein L35, non-mitochondrial; RIBOSOMALL35,Ribosomal pr,CUFF.50086.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130300.1 | 50S ribosomal protein L35 | HC | chr4:54279793...   152   9e-38
Medtr4g130300.2 | 50S ribosomal protein L35 | HC | chr4:54279793...    63   9e-11

>Medtr4g130300.1 | 50S ribosomal protein L35 | HC |
           chr4:54279793-54282515 | 20130731
          Length = 148

 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 102/125 (81%), Gaps = 1/125 (0%)

Query: 24  TRLSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSSRSLTIVAAKGYKMKTH 83
           TR+S++SV+ P S+  NS+KL+ S  IS PI  Q    VT  S RSLTIV+AKGYKMKTH
Sbjct: 25  TRVSFSSVKSPFSNNVNSLKLNWSCSISAPILNQNHSIVTT-SPRSLTIVSAKGYKMKTH 83

Query: 84  KASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKMHPVNRSDYDNVIGALPYLKV 143
           KASAKRFRVTG GKIVRRRAGKQHLL KKN KRKLRLSKM  VNRSDYDNVIGALPYLKV
Sbjct: 84  KASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKV 143

Query: 144 NRNAT 148
           NR AT
Sbjct: 144 NRKAT 148


>Medtr4g130300.2 | 50S ribosomal protein L35 | HC |
          chr4:54279793-54282511 | 20130731
          Length = 115

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 24 TRLSYASVRLPPSHKTNSVKLSSSACISTPIFQQKLCTVTPPSSRSLTIVAAKGYKMKTH 83
          TR+S++SV+ P S+  NS+KL+ S  IS PI  Q    VT  S RSLTIV+AKGYKMKTH
Sbjct: 25 TRVSFSSVKSPFSNNVNSLKLNWSCSISAPILNQNHSIVTT-SPRSLTIVSAKGYKMKTH 83

Query: 84 KAS 86
          K S
Sbjct: 84 KQS 86