Miyakogusa Predicted Gene

Lj4g3v2003010.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2003010.1 Non Characterized Hit- tr|I1IDE3|I1IDE3_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,37.85,2e-18,
,gene.g55982.t1.1
         (174 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130310.2 | hypothetical protein | HC | chr4:54285251-5428...   197   5e-51
Medtr4g130310.1 | hypothetical protein | HC | chr4:54285201-5428...   197   6e-51
Medtr4g007710.1 | hypothetical protein | HC | chr4:1204102-11997...   113   1e-25
Medtr4g130350.1 | hypothetical protein | LC | chr4:54301178-5430...    86   1e-17

>Medtr4g130310.2 | hypothetical protein | HC |
           chr4:54285251-54289129 | 20130731
          Length = 495

 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 124/172 (72%), Gaps = 17/172 (9%)

Query: 1   MQMPGLRHSMSVSDFIGHIEHCLSEEMISGNPSFSDRISEYQEMLDDISQHLLNDNQATE 60
           +++PGLR SMS+SDF+GHIEH +S+EM SG+PSFS    EYQ+M+D I+QHLLNDNQ T 
Sbjct: 341 IKLPGLRPSMSMSDFLGHIEHHISKEMASGDPSFSAERLEYQQMMDGITQHLLNDNQVT- 399

Query: 61  ASSDEKSLMTRVNSLRSLLQKDPAAVQNPHGKASAVEGPEDGGNIQGGSHDHESMQDNRI 120
             SDEKSLM+RVNSLR LLQ DP AV N H     +EGP D                 ++
Sbjct: 400 TDSDEKSLMSRVNSLRCLLQMDPPAVPNSHDNTGFIEGPNDA----------------KV 443

Query: 121 EIDVKAADEDLRDVSGGKQAPGMTRKDSFAELLFNLPRIASLPKFLYNISEE 172
            ID+KA +E+ RDV GG  APGM+RKDSF +LL +LPRIASLPKFL++ISE+
Sbjct: 444 NIDIKATEENSRDVYGGNPAPGMSRKDSFGDLLLSLPRIASLPKFLFDISED 495


>Medtr4g130310.1 | hypothetical protein | HC |
           chr4:54285201-54289456 | 20130731
          Length = 496

 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 124/172 (72%), Gaps = 17/172 (9%)

Query: 1   MQMPGLRHSMSVSDFIGHIEHCLSEEMISGNPSFSDRISEYQEMLDDISQHLLNDNQATE 60
           +++PGLR SMS+SDF+GHIEH +S+EM SG+PSFS    EYQ+M+D I+QHLLNDNQ T 
Sbjct: 342 IKLPGLRPSMSMSDFLGHIEHHISKEMASGDPSFSAERLEYQQMMDGITQHLLNDNQVT- 400

Query: 61  ASSDEKSLMTRVNSLRSLLQKDPAAVQNPHGKASAVEGPEDGGNIQGGSHDHESMQDNRI 120
             SDEKSLM+RVNSLR LLQ DP AV N H     +EGP D                 ++
Sbjct: 401 TDSDEKSLMSRVNSLRCLLQMDPPAVPNSHDNTGFIEGPNDA----------------KV 444

Query: 121 EIDVKAADEDLRDVSGGKQAPGMTRKDSFAELLFNLPRIASLPKFLYNISEE 172
            ID+KA +E+ RDV GG  APGM+RKDSF +LL +LPRIASLPKFL++ISE+
Sbjct: 445 NIDIKATEENSRDVYGGNPAPGMSRKDSFGDLLLSLPRIASLPKFLFDISED 496


>Medtr4g007710.1 | hypothetical protein | HC | chr4:1204102-1199740
           | 20130731
          Length = 525

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 108/176 (61%), Gaps = 16/176 (9%)

Query: 1   MQMPGLRHSMSVSDFIGHIEHCLSEEMISGNPSFSDRISEYQEMLDDISQHLLNDN---Q 57
           +++PGL  SMS+ D + HIEHC+SE+M   N SF++     + +L++ +Q+L ND+    
Sbjct: 356 IKLPGLHPSMSMDDLVNHIEHCISEQMGPENSSFTND----RAVLEEFTQYLFNDSIFPP 411

Query: 58  ATEASSDEKSLMTRVNSLRSLLQKDPAAVQNPHGKASAVEGPEDGGNIQGGSHDHESMQD 117
            ++  SDE+++M+RVNSL  LLQKDP+A   P  K       ++G N+   + D +  + 
Sbjct: 412 VSDEQSDEQNVMSRVNSLYCLLQKDPSA---PEEKQV-----QNGNNVFDAAEDRKVDEG 463

Query: 118 NRIEIDVKAADEDLRDVSGGKQAP-GMTRKDSFAELLFNLPRIASLPKFLYNISEE 172
                D+    +D  D SG +Q   G++RK+S  +LL NLPRIASLP FL+ +SE+
Sbjct: 464 KSKMFDLGFQQDDDDDASGSQQQENGLSRKESAGDLLLNLPRIASLPHFLFPMSED 519


>Medtr4g130350.1 | hypothetical protein | LC |
           chr4:54301178-54301516 | 20130731
          Length = 77

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 109 SHDHESMQDNRIEIDVKAADEDLRDVSGGKQAPGMTRKDSFAELLFNLPRIASLPKFLYN 168
           SHD ESMQ N I+ID++AA+E+ RDV       GM RKDSF +LLFNLPRIASLPKFL+N
Sbjct: 14  SHDLESMQGNGIQIDMQAAEEEWRDVYDDNLESGMFRKDSFGDLLFNLPRIASLPKFLFN 73

Query: 169 ISEE 172
           +S++
Sbjct: 74  MSQD 77