Miyakogusa Predicted Gene

Lj4g3v2002950.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2002950.2 tr|B9IMA8|B9IMA8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_262596
PE=4,45.45,2e-18,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; Zein-binding,Zein-binding domain;,CUFF.50083.2
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130400.1 | zein-binding protein | HC | chr4:54329738-5432...   612   e-175
Medtr4g130400.2 | zein-binding protein | HC | chr4:54330190-5432...   612   e-175
Medtr7g107000.1 | zein-binding protein | HC | chr7:43593446-4359...    81   2e-15
Medtr1g054835.1 | zein-binding protein | HC | chr1:24015959-2402...    77   3e-14
Medtr1g054835.2 | zein-binding protein | HC | chr1:24015959-2402...    77   3e-14
Medtr0168s0060.1 | zein-binding protein | HC | scaffold0168:1885...    66   7e-11
Medtr5g078300.1 | zein-binding protein | HC | chr5:33462340-3346...    61   3e-09
Medtr1g070350.1 | zein-binding protein | HC | chr1:31104852-3110...    56   6e-08
Medtr4g093150.1 | zein-binding protein | HC | chr4:36964333-3696...    55   1e-07
Medtr4g011550.1 | zein-binding protein | HC | chr4:2845042-28411...    53   6e-07
Medtr4g107310.1 | zein-binding protein | HC | chr4:44349938-4435...    52   1e-06

>Medtr4g130400.1 | zein-binding protein | HC |
           chr4:54329738-54326974 | 20130731
          Length = 459

 Score =  612 bits (1577), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/468 (67%), Positives = 367/468 (78%), Gaps = 29/468 (6%)

Query: 6   MAESDITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESS 65
           M+ESDITAMKETLRAQQQLLQKLYAELDQER          MDMILRLQGEKAAVKME+S
Sbjct: 1   MSESDITAMKETLRAQQQLLQKLYAELDQEREASATAASEAMDMILRLQGEKAAVKMEAS 60

Query: 66  HYKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLGADFNASELEFP 125
           HYKRM+EEKIGHAEATLEVFEELMYQKEMEIASLEFQV AYKHKLLTLGADFNASE EFP
Sbjct: 61  HYKRMSEEKIGHAEATLEVFEELMYQKEMEIASLEFQVCAYKHKLLTLGADFNASEFEFP 120

Query: 126 EDFLLSKNDQR-NVENDQGSSVRRLHSLPPIQWKNNSRAHRKRDRSPSPVPVPNEIPKVV 184
           ED +L++NDQ+ N EN Q S+++RL SLPPI  KN  RA+RKRDRSP+P+PV + IP  +
Sbjct: 121 EDHILNRNDQQHNGENVQSSTIKRLSSLPPIPSKNRDRANRKRDRSPTPIPVSDVIPNTL 180

Query: 185 ESENQEAASPRLDLPKKSVDFAFGTLDSYWDQIQSLDEKMKVISDCKDSGSEKVANLRNR 244
           E  ++E  SP L+LP+KS+D  +GTLDSYW+QIQSLDEK+  ISDCK+SG EK ANLR+R
Sbjct: 181 EDRDREVISPSLELPRKSMDLTYGTLDSYWNQIQSLDEKVNEISDCKESGVEKCANLRSR 240

Query: 245 RGRSCSIFAQAGTKVA---------PTISDKVNHFE------AIANPSCSVNVHDVFEVP 289
           RGRSCSIF+Q   K+          P  +DK NHFE       +++PSCSVNVHDVFEVP
Sbjct: 241 RGRSCSIFSQESNKIPLDKSYRLPYPINADKENHFERGMDTPQVSSPSCSVNVHDVFEVP 300

Query: 290 QTSEKHKVGEQGRGRLVKWMSETDNRLTKPDPVSEEIIESHVKHDMDKLKSI-LSTQREI 348
           QTSEKH+V E G+ RL +W+S+ DNRL KPD +SEEIIE+HVKHDM+KLKSI LST  E+
Sbjct: 301 QTSEKHEVSEHGKRRLERWISDVDNRLIKPDSMSEEIIEAHVKHDMEKLKSIMLSTNHEV 360

Query: 349 KKPGPKELKTIGCENKEGMEVDCNAQAEFQKLHQRIDLLERDRISSRQ-EIMHEGNGEEQ 407
           KK   K  K+          VDCN +AEF KLHQRID LER+R+S RQ EI HEGNGEE 
Sbjct: 361 KKSNHKGAKSA---------VDCNVEAEFHKLHQRIDRLERERVSIRQDEIRHEGNGEEY 411

Query: 408 LRLLKDIHNQLKLIQSEMRSW-KTRKASLKK-DMPLDPLQEAMLYFWM 453
           LRLLKDI +QL  IQSEMR+  KT+KAS KK D+ L PLQEAMLYFW+
Sbjct: 412 LRLLKDIQSQLNSIQSEMRNCNKTKKASPKKEDVSLGPLQEAMLYFWL 459


>Medtr4g130400.2 | zein-binding protein | HC |
           chr4:54330190-54326974 | 20130731
          Length = 459

 Score =  612 bits (1577), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/468 (67%), Positives = 367/468 (78%), Gaps = 29/468 (6%)

Query: 6   MAESDITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESS 65
           M+ESDITAMKETLRAQQQLLQKLYAELDQER          MDMILRLQGEKAAVKME+S
Sbjct: 1   MSESDITAMKETLRAQQQLLQKLYAELDQEREASATAASEAMDMILRLQGEKAAVKMEAS 60

Query: 66  HYKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLGADFNASELEFP 125
           HYKRM+EEKIGHAEATLEVFEELMYQKEMEIASLEFQV AYKHKLLTLGADFNASE EFP
Sbjct: 61  HYKRMSEEKIGHAEATLEVFEELMYQKEMEIASLEFQVCAYKHKLLTLGADFNASEFEFP 120

Query: 126 EDFLLSKNDQR-NVENDQGSSVRRLHSLPPIQWKNNSRAHRKRDRSPSPVPVPNEIPKVV 184
           ED +L++NDQ+ N EN Q S+++RL SLPPI  KN  RA+RKRDRSP+P+PV + IP  +
Sbjct: 121 EDHILNRNDQQHNGENVQSSTIKRLSSLPPIPSKNRDRANRKRDRSPTPIPVSDVIPNTL 180

Query: 185 ESENQEAASPRLDLPKKSVDFAFGTLDSYWDQIQSLDEKMKVISDCKDSGSEKVANLRNR 244
           E  ++E  SP L+LP+KS+D  +GTLDSYW+QIQSLDEK+  ISDCK+SG EK ANLR+R
Sbjct: 181 EDRDREVISPSLELPRKSMDLTYGTLDSYWNQIQSLDEKVNEISDCKESGVEKCANLRSR 240

Query: 245 RGRSCSIFAQAGTKVA---------PTISDKVNHFE------AIANPSCSVNVHDVFEVP 289
           RGRSCSIF+Q   K+          P  +DK NHFE       +++PSCSVNVHDVFEVP
Sbjct: 241 RGRSCSIFSQESNKIPLDKSYRLPYPINADKENHFERGMDTPQVSSPSCSVNVHDVFEVP 300

Query: 290 QTSEKHKVGEQGRGRLVKWMSETDNRLTKPDPVSEEIIESHVKHDMDKLKSI-LSTQREI 348
           QTSEKH+V E G+ RL +W+S+ DNRL KPD +SEEIIE+HVKHDM+KLKSI LST  E+
Sbjct: 301 QTSEKHEVSEHGKRRLERWISDVDNRLIKPDSMSEEIIEAHVKHDMEKLKSIMLSTNHEV 360

Query: 349 KKPGPKELKTIGCENKEGMEVDCNAQAEFQKLHQRIDLLERDRISSRQ-EIMHEGNGEEQ 407
           KK   K  K+          VDCN +AEF KLHQRID LER+R+S RQ EI HEGNGEE 
Sbjct: 361 KKSNHKGAKSA---------VDCNVEAEFHKLHQRIDRLERERVSIRQDEIRHEGNGEEY 411

Query: 408 LRLLKDIHNQLKLIQSEMRSW-KTRKASLKK-DMPLDPLQEAMLYFWM 453
           LRLLKDI +QL  IQSEMR+  KT+KAS KK D+ L PLQEAMLYFW+
Sbjct: 412 LRLLKDIQSQLNSIQSEMRNCNKTKKASPKKEDVSLGPLQEAMLYFWL 459


>Medtr7g107000.1 | zein-binding protein | HC |
           chr7:43593446-43590055 | 20130731
          Length = 481

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 10  DITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSHYKR 69
           +  A++E + +QQ+ +Q L +EL++ER          M MILRLQ EKA ++ME+  +KR
Sbjct: 66  ECVALREAVSSQQKAIQDLCSELEEERNAASSAANETMSMILRLQTEKAELEMEARQFKR 125

Query: 70  MTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLG---ADFNASELEFP 125
             EE+  H +  L   EEL+Y++E  I SL  +V AYKH++L+ G   ++    + EFP
Sbjct: 126 FVEERTCHDQQELLALEELLYKREQVIHSLTCEVQAYKHRMLSYGLTESEVEGGDYEFP 184


>Medtr1g054835.1 | zein-binding protein | HC |
           chr1:24015959-24022175 | 20130731
          Length = 486

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 4/115 (3%)

Query: 4   TSMAESDIT----AMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAA 59
            S+A  DI      ++E +  QQ+ +Q L  EL++ER          M MILRLQ EKA 
Sbjct: 51  VSVARVDIVNECVVLREMVSMQQRTIQDLNEELEEERNSASTAANEAMSMILRLQREKAE 110

Query: 60  VKMESSHYKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLG 114
           V+ME+  +KR  EEK+ H +  L   E+L+Y++E  I SL  +V AYKH++++ G
Sbjct: 111 VQMEARQFKRFAEEKMTHDQEELMSLEDLLYKREQIIQSLTCEVQAYKHRMMSFG 165


>Medtr1g054835.2 | zein-binding protein | HC |
           chr1:24015959-24022175 | 20130731
          Length = 486

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 4/115 (3%)

Query: 4   TSMAESDIT----AMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAA 59
            S+A  DI      ++E +  QQ+ +Q L  EL++ER          M MILRLQ EKA 
Sbjct: 51  VSVARVDIVNECVVLREMVSMQQRTIQDLNEELEEERNSASTAANEAMSMILRLQREKAE 110

Query: 60  VKMESSHYKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLG 114
           V+ME+  +KR  EEK+ H +  L   E+L+Y++E  I SL  +V AYKH++++ G
Sbjct: 111 VQMEARQFKRFAEEKMTHDQEELMSLEDLLYKREQIIQSLTCEVQAYKHRMMSFG 165


>Medtr0168s0060.1 | zein-binding protein | HC |
           scaffold0168:18855-21061 | 20130731
          Length = 520

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 65/112 (58%)

Query: 2   VETSMAESDITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVK 61
           V+    ++ +  +K  +R  ++ L  LY +LD+ER          M MI RLQ EKAAV+
Sbjct: 322 VQNDFDDAIVNNLKRQVRLDRKSLMALYMDLDEERSASAVAANNAMAMITRLQAEKAAVQ 381

Query: 62  MESSHYKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTL 113
           ME+  Y+RM EE+  + E  LE   +++ ++E EI +LE ++  Y++K  TL
Sbjct: 382 MEALQYQRMMEEQAEYDEEALEATNDMLIKREEEIRALEAELDFYRNKYGTL 433


>Medtr5g078300.1 | zein-binding protein | HC |
           chr5:33462340-33466036 | 20130731
          Length = 986

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 11  ITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSHYKRM 70
           I  +K +L+A+Q+ L  +Y EL++ER          M MI RLQ EKAA++ME+  Y+RM
Sbjct: 617 IDRLKTSLKAEQRALSAIYQELEEERSASAIATNQTMAMITRLQEEKAAMQMEALQYQRM 676

Query: 71  TEEKIGHAEATLEVFEELM 89
            EE+  + +  L++  +LM
Sbjct: 677 MEEQAEYDQEALQLLNDLM 695


>Medtr1g070350.1 | zein-binding protein | HC |
           chr1:31104852-31101335 | 20130731
          Length = 866

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%)

Query: 7   AESDITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSH 66
            ES +  +K  +   ++ +  L  EL++ER          M MI RLQ EKA+++ME+  
Sbjct: 526 GESIVDQLKRQIEYDKRYMDDLQKELEEERNASAIAANEAMSMITRLQEEKASLQMEAHQ 585

Query: 67  YKRMTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYK 107
           Y RM EE+  +    L+   +L+ +KE EI  LE ++  Y+
Sbjct: 586 YLRMMEEQAEYDNEELDKVNDLLTEKEKEIQDLEAELDYYR 626


>Medtr4g093150.1 | zein-binding protein | HC |
           chr4:36964333-36964974 | 20130731
          Length = 213

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 10  DITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSHYKR 69
           D   +++ ++ +++     +AELD+ER          M MILRLQ EK++ +++++ ++R
Sbjct: 72  DAMTLRKLIKIERRKANAAFAELDKERIAASSSAEEAMAMILRLQSEKSSAEIQANQFRR 131

Query: 70  MTEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKL-LTLGAD 116
           M E+K+ + +  +E  E  + + E   + LE Q+  Y+ +L   LG D
Sbjct: 132 MAEQKLEYDDEVIESLEWTITRHESHRSVLEEQLRVYREELKQYLGED 179


>Medtr4g011550.1 | zein-binding protein | HC | chr4:2845042-2841114
           | 20130731
          Length = 587

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 59/113 (52%)

Query: 11  ITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSHYKRM 70
           +T  +  L  +      LY EL++ER          M MI RLQ EK++++ME   Y+R+
Sbjct: 274 VTMYENPLEGENAAYAALYLELEKERAAAATAADEAMAMISRLQEEKSSMEMEMRQYERL 333

Query: 71  TEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLGADFNASELE 123
            EE++ + E  + + +E++ ++E E   LE ++  ++   LT   + ++   E
Sbjct: 334 IEERVSYDEEEMNIMQEILIRRERENLFLEKELETFRQMSLTESCELHSKSAE 386


>Medtr4g107310.1 | zein-binding protein | HC |
           chr4:44349938-44351689 | 20130731
          Length = 505

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%)

Query: 11  ITAMKETLRAQQQLLQKLYAELDQERXXXXXXXXXXMDMILRLQGEKAAVKMESSHYKRM 70
           +  +K  +R  ++ L  LY ELD+ER          M MI RLQ EKA + M++S Y+RM
Sbjct: 329 LNNLKRQVRLDRKSLMALYMELDEERSASAVAANNAMAMITRLQEEKATLHMDTSQYQRM 388

Query: 71  TEEKIGHAEATLEVFEELMYQKEMEIASLEFQVLAYKHKLLTLGAD 116
            EE+I + E  L+   EL+ + E E+ +L+ ++  Y+ K   L  D
Sbjct: 389 MEEQIEYDEEVLQETNELLLKLEEEVKTLDAELEIYRDKYGCLTED 434