Miyakogusa Predicted Gene

Lj4g3v2000890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2000890.1 tr|D7U1D4|D7U1D4_VITVI Translation initiation
factor IF-3 OS=Vitis vinifera GN=VIT_11s0037g00520 PE=,69.96,0,no
description,Translation initiation factor 3, N-terminal; no
description,Translation initiation fa,CUFF.50075.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130530.1 | translation initiation factor IF-3 | HC | chr4...   261   5e-70
Medtr4g130530.2 | translation initiation factor IF-3 | HC | chr4...   226   2e-59
Medtr4g130530.3 | translation initiation factor IF-3 | HC | chr4...   123   1e-28
Medtr7g017820.1 | translation initiation factor IF-3, putative |...    60   2e-09

>Medtr4g130530.1 | translation initiation factor IF-3 | HC |
           chr4:54393562-54389242 | 20130731
          Length = 266

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 157/215 (73%), Gaps = 5/215 (2%)

Query: 41  PHSIKFDPLPH---PPHAIVTXXXXX--XXXXXXXDFRKRQAQAESEDEQALDLSKLKSA 95
           PHS+     P    P HA V               +FR+   + +++D QALDLS L S 
Sbjct: 27  PHSLNLQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRAPPEKDADDGQALDLSTLSSN 86

Query: 96  TVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPVVKIMDYSXXXXXXXXXXX 155
           TVRLID+ QNMVGVVS  QAI+MA+DA+LDLVIVS EADPPVV+IM+YS           
Sbjct: 87  TVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKR 146

Query: 156 XXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFLTDGDKVKVIVNLKGRENEFRNI 215
                SAASRMDLKELKMGYNIDQHDYSVRL+AARKFL+DGDKVKVIVNLKGRE EFRN 
Sbjct: 147 DQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNN 206

Query: 216 AIELIKRFQNDVGELGTEEAKSFRDRNIFILLVPN 250
           AIELI+RFQNDVG+L TEEAK+FRD+NIFI L+PN
Sbjct: 207 AIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPN 241


>Medtr4g130530.2 | translation initiation factor IF-3 | HC |
           chr4:54393562-54389216 | 20130731
          Length = 232

 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 139/195 (71%), Gaps = 5/195 (2%)

Query: 41  PHSIKFDPLPH---PPHAIVTXXXXX--XXXXXXXDFRKRQAQAESEDEQALDLSKLKSA 95
           PHS+     P    P HA V               +FR+   + +++D QALDLS L S 
Sbjct: 27  PHSLNLQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRAPPEKDADDGQALDLSTLSSN 86

Query: 96  TVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPVVKIMDYSXXXXXXXXXXX 155
           TVRLID+ QNMVGVVS  QAI+MA+DA+LDLVIVS EADPPVV+IM+YS           
Sbjct: 87  TVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKR 146

Query: 156 XXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFLTDGDKVKVIVNLKGRENEFRNI 215
                SAASRMDLKELKMGYNIDQHDYSVRL+AARKFL+DGDKVKVIVNLKGRE EFRN 
Sbjct: 147 DQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNN 206

Query: 216 AIELIKRFQNDVGEL 230
           AIELI+RFQNDVG++
Sbjct: 207 AIELIRRFQNDVGKV 221


>Medtr4g130530.3 | translation initiation factor IF-3 | HC |
           chr4:54393562-54390973 | 20130731
          Length = 165

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 85/139 (61%), Gaps = 5/139 (3%)

Query: 41  PHSIKFDPLPH---PPHAIVTXXXXX--XXXXXXXDFRKRQAQAESEDEQALDLSKLKSA 95
           PHS+     P    P HA V               +FR+   + +++D QALDLS L S 
Sbjct: 27  PHSLNLQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRAPPEKDADDGQALDLSTLSSN 86

Query: 96  TVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEADPPVVKIMDYSXXXXXXXXXXX 155
           TVRLID+ QNMVGVVS  QAI+MA+DA+LDLVIVS EADPPVV+IM+YS           
Sbjct: 87  TVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKR 146

Query: 156 XXXXXSAASRMDLKELKMG 174
                SAASRMDLKELKMG
Sbjct: 147 DQQKKSAASRMDLKELKMG 165


>Medtr7g017820.1 | translation initiation factor IF-3, putative | HC
           | chr7:5728040-5729127 | 20130731
          Length = 97

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 31/33 (93%)

Query: 197 DKVKVIVNLKGRENEFRNIAIELIKRFQNDVGE 229
           +KVKVIVNLKGRE EFRN AIELI+RFQNDVG+
Sbjct: 4   EKVKVIVNLKGREKEFRNNAIELIRRFQNDVGK 36