Miyakogusa Predicted Gene

Lj4g3v1983660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983660.1 Non Characterized Hit- tr|D7MBT8|D7MBT8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.8,7e-16,coiled-coil,NULL; seg,NULL,CUFF.50058.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130700.1 | hypothetical protein | HC | chr4:54464551-5446...   330   7e-91
Medtr4g130700.2 | hypothetical protein | HC | chr4:54464188-5446...   226   1e-59

>Medtr4g130700.1 | hypothetical protein | HC |
           chr4:54464551-54461358 | 20130731
          Length = 261

 Score =  330 bits (847), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 174/264 (65%), Positives = 204/264 (77%), Gaps = 7/264 (2%)

Query: 1   MKKMKGVVVSMESPSDLFMDRRAMLRHQSLLQDYEDLHRETEAMRRKLPAIKQKKLTLSA 60
           MKKMKGV  SM  P D++MD R+M+RHQSLLQDYEDL++ETEAMRRKL A+KQKKL LSA
Sbjct: 2   MKKMKGVSASMNPPPDVYMDHRSMMRHQSLLQDYEDLNKETEAMRRKLEAVKQKKLILSA 61

Query: 61  DVRFLRQRYXXXXXXXXXXXXXXXXXXXXXXIKIQAPTIPKGRNYNRKESTLRPPRIASN 120
           +VRFLRQRY                      +KI+ P I KGRNYNRKESTLRP   AS 
Sbjct: 62  EVRFLRQRYKYLLKHPLPKPQPNQEVLKPQKLKIKEPKIAKGRNYNRKESTLRP-HAASK 120

Query: 121 MNPPKERSSNG-GVENTLQKSGHVFDLNQNARNSSKKDASFHNSA-PVLDLNH-DRIHSG 177
           +NP KER  NG  VE+TLQK+ HVFDLNQN R+ +KKDASFH+SA PVLD NH DR+ SG
Sbjct: 121 LNP-KERVFNGRAVEDTLQKTSHVFDLNQNGRSLNKKDASFHSSAAPVLDSNHKDRVQSG 179

Query: 178 KETSQTTKSSAPFFDLNQISREEEELQGNTEPLWIEEPKRSALRVVSEEQLNDVKLSVCR 237
           KE ++  KS  PFFDLNQISREEEEL+G+ + +WIEE K++A RVV+EEQ+ND+KLSVCR
Sbjct: 180 KEAAK--KSVTPFFDLNQISREEEELEGDNQSMWIEEQKKNAQRVVNEEQINDIKLSVCR 237

Query: 238 NIGDGPSRAVKRKISWQDQVALRV 261
           NIG+G SRA KRKI+WQDQVALRV
Sbjct: 238 NIGEGSSRAGKRKITWQDQVALRV 261


>Medtr4g130700.2 | hypothetical protein | HC |
           chr4:54464188-54461584 | 20130731
          Length = 210

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 144/198 (72%), Gaps = 7/198 (3%)

Query: 1   MKKMKGVVVSMESPSDLFMDRRAMLRHQSLLQDYEDLHRETEAMRRKLPAIKQKKLTLSA 60
           MKKMKGV  SM  P D++MD R+M+RHQSLLQDYEDL++ETEAMRRKL A+KQKKL LSA
Sbjct: 2   MKKMKGVSASMNPPPDVYMDHRSMMRHQSLLQDYEDLNKETEAMRRKLEAVKQKKLILSA 61

Query: 61  DVRFLRQRYXXXXXXXXXXXXXXXXXXXXXXIKIQAPTIPKGRNYNRKESTLRPPRIASN 120
           +VRFLRQRY                      +KI+ P I KGRNYNRKESTLR P  AS 
Sbjct: 62  EVRFLRQRYKYLLKHPLPKPQPNQEVLKPQKLKIKEPKIAKGRNYNRKESTLR-PHAASK 120

Query: 121 MNPPKERSSNG-GVENTLQKSGHVFDLNQNARNSSKKDASFHNS-APVLDLNH-DRIHSG 177
           +N PKER  NG  VE+TLQK+ HVFDLNQN R+ +KKDASFH+S APVLD NH DR+ SG
Sbjct: 121 LN-PKERVFNGRAVEDTLQKTSHVFDLNQNGRSLNKKDASFHSSAAPVLDSNHKDRVQSG 179

Query: 178 KETSQTTKSSAPFFDLNQ 195
           KE ++  KS  PFFDLNQ
Sbjct: 180 KEAAK--KSVTPFFDLNQ 195