Miyakogusa Predicted Gene

Lj4g3v1983620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983620.1 tr|C1MW67|C1MW67_MICPC Type II secretory pathway
family protein OS=Micromonas pusilla (strain
CCMP15,46.79,3e-18,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; seg,NULL; SRP-alpha_N,Signal recogn,CUFF.50092.1
         (615 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130770.1 | signal recognition particle receptor protein, ...   875   0.0  
Medtr7g104890.1 | signal recognition particle 54 kDa protein | H...   112   1e-24
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H...   112   1e-24
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H...   111   3e-24
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H...   102   1e-21
Medtr8g032340.1 | signal recognition particle receptor FtsY | HC...    75   3e-13
Medtr7g085470.1 | signal recognition particle protein | LC | chr...    66   1e-10
Medtr8g032480.1 | signal recognition particle protein | HC | chr...    52   1e-06

>Medtr4g130770.1 | signal recognition particle receptor protein,
           putative | HC | chr4:54489810-54494349 | 20130731
          Length = 631

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/637 (73%), Positives = 495/637 (77%), Gaps = 28/637 (4%)

Query: 1   MLEQLLIFTRGGLILWSW---GNALKGSPIDTLIRSCLLEERSGAASYTHDS----YSLK 53
           MLEQLLIFTRGGLILWS    GNALKGSPIDTLIRSCLLEERSGA+SY +D+    YSLK
Sbjct: 1   MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60

Query: 54  WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSLIHDPSKKTLYPDFDETFRQLKIE 113
           WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFS ++DP++ T+Y DFDE F+QLKIE
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTR-TVYRDFDEIFKQLKIE 119

Query: 114 AEARAEDLKKSSNAVTAIGGNRKQQ----AXXXXXXXXXXXXXXXXXXXXXXXXXRKLEN 169
           AEARAEDLKKS+  +  +GGNRKQQ                              +  EN
Sbjct: 120 AEARAEDLKKSNPVI--VGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDGDGKNGKKNSEN 177

Query: 170 GDSVVVANDS--NMRKS------SVNGKENESSNVGAFDVNKLQK-LRSKGGDVKKKKIT 220
             S +V N +  N+R +      SVNGKEN+S N GAFDVN+LQK +R+KGG+ KK   T
Sbjct: 178 DRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKK---T 234

Query: 221 DSXXXXXXXXXXXXXNRVWDESTPETKLDFTDQVXXXXXXXX-RKVDYLAKEQGESMMXX 279
           D+             NRVWDE   ETKLDFTD V         RKVDYLAKEQGESMM  
Sbjct: 235 DAVVTKAEPKKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDYLAKEQGESMMDK 294

Query: 280 XXX-XXXXXXXXXXXXXXXXXXXXXXXXXXGWFSSMFQSIAGKANLEKSDLEPALKALKD 338
                                         GWFSSMFQSIAGKANLEKSDLEPALKALKD
Sbjct: 295 DEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKD 354

Query: 339 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALVRILTPRRSIDILR 398
           RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTV AAME+ALVRILTPRRSIDILR
Sbjct: 355 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILR 414

Query: 399 DIHAAKEHRKPYXXXXXXXXXXXKSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRT 458
           D+HAAKE RKPY           KSTNLAKVAYWLQQHNV+VMMAACDTFRSGAVEQLRT
Sbjct: 415 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRT 474

Query: 459 HARRLQIPIFEKGYEKDPALVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY 518
           HARRLQIPIFEKGYEKDPA+VAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY
Sbjct: 475 HARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY 534

Query: 519 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAA 578
           LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTS TPRLIDGILLTKFDTIDDKVGAA
Sbjct: 535 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAA 594

Query: 579 LSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 615
           LSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK
Sbjct: 595 LSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 631


>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 553

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 104/181 (57%), Gaps = 11/181 (6%)

Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
           K+T  AK+A + ++   S M+ A D +R  A++QL    +++ +P++  G +  P+ +AK
Sbjct: 179 KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 238

Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
           +  +EA +   DVV+VDTAGR+Q ++ +M  L  +  + NP  VL V +A+ G +A   +
Sbjct: 239 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 298

Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
           + FN ++           I G +LTK D  D + GAALS+  +SG P+  VG G+   DL
Sbjct: 299 TTFNLEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDL 347

Query: 602 K 602
           +
Sbjct: 348 E 348


>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 420

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 104/181 (57%), Gaps = 11/181 (6%)

Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
           K+T  AK+A + ++   S M+ A D +R  A++QL    +++ +P++  G +  P+ +AK
Sbjct: 46  KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 105

Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
           +  +EA +   DVV+VDTAGR+Q ++ +M  L  +  + NP  VL V +A+ G +A   +
Sbjct: 106 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 165

Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
           + FN ++           I G +LTK D  D + GAALS+  +SG P+  VG G+   DL
Sbjct: 166 TTFNLEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDL 214

Query: 602 K 602
           +
Sbjct: 215 E 215


>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
           chr4:2207891-2201607 | 20130731
          Length = 496

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 11/193 (5%)

Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
           K+T   K A++ Q+      +   DTFR+GA +QL+ +A + +IP +    E DP  +A 
Sbjct: 114 KTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAV 173

Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
           E ++   +   D+++VDT+GR +    L   + ++     PDLV+FV ++ +G  A DQ 
Sbjct: 174 EGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQA 233

Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
             F Q +A          +  +++TK D    K G ALS V  + +PV+F+G G+   + 
Sbjct: 234 QAFKQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEF 282

Query: 602 KKLNVKSIVKTLL 614
           +  +VK  V  LL
Sbjct: 283 EVFDVKPFVSRLL 295


>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
           chr2:44822528-44828469 | 20130731
          Length = 470

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
           K+T   K A+  Q+      +   DTFR+GA +QL+ +A + +IP +    E DP  +A 
Sbjct: 114 KTTTCTKYAHCYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAV 173

Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
           E ++       D+++VDT+GR +    L   + +L     PDLV+FV ++ +G  A +Q 
Sbjct: 174 EGVERFKEEDHDLIIVDTSGRHKQEASLFEEMRQLSEATKPDLVIFVMDSSIGQAAFNQA 233

Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
             F Q +A          +  +++TK D    K G +LS V  + +PV+F+G G+     
Sbjct: 234 QAFKQIVA----------VGAVIITKMDG-HAKGGGSLSAVAATKSPVIFIGTGEHMDQF 282

Query: 602 KKLNVKSIVKTLL 614
           +   V+  V  LL
Sbjct: 283 EVFEVQPFVSRLL 295


>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
           chr8:12218070-12210399 | 20130731
          Length = 371

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 39/302 (12%)

Query: 327 SDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALVR 386
           SD +  L  L++ L+  +   +I  K+ E++   +   KL S + I        +EAL  
Sbjct: 94  SDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSEI--------KEAL-- 143

Query: 387 ILTPRRSIDILRDIHAAKE----HRKPYXXXXXXXXXXXKSTNLAKVAYWLQQHNVSVMM 442
               +  +D+L +  +  E    +RKP            K+T+L K+AY L+     +++
Sbjct: 144 ---KKNVLDLLSNKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILL 200

Query: 443 AACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPA-LVAKEAIQEASRN------GSDVV 495
           AA DTFR+ A +QL   A R    I     EK  A  V  +A++   R       G  V+
Sbjct: 201 AAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVHVI 260

Query: 496 LVDTAGRMQDNEPLM---RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 552
                   +  E L+   +A++K++    P+ +L V +   G + + Q  +FN+ +    
Sbjct: 261 FSGLHTNYRLMEELISCKKAVAKVVA-GAPNEILLVLDGTTGLNMLPQAREFNEVVG--- 316

Query: 553 TSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKT 612
                  + G++LTK D    + G  +S+V   G PV FVG G+   DL+  + ++ V  
Sbjct: 317 -------VTGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 368

Query: 613 LL 614
           + 
Sbjct: 369 IF 370


>Medtr7g085470.1 | signal recognition particle protein | LC |
           chr7:33117310-33115264 | 20130731
          Length = 321

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 22/200 (11%)

Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK-GYEKDPALVA 480
           K+T  A+ A   Q+  +   +   DT R+GA +QL+       IP + + GY ++     
Sbjct: 92  KTTTCAQFANHYQKKGLKTGLVCTDTLRNGAFDQLKQIYAETNIPCYGRVGYCQN----C 147

Query: 481 KEAIQEASRNGSDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 539
           +E   +      D+++VD + G  Q+ + L+  + ++     PDLV+ V +  +G  A D
Sbjct: 148 RERCGQMQGGNCDLIIVDVSGGHKQEEDALIEEIHQVSKATKPDLVILVIDGNIGQHAFD 207

Query: 540 -----QLSKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGC 594
                Q + F Q + D+   +  ++ DG  +          G +LS V  + + V+F+G 
Sbjct: 208 HRSLKQATAFTQSV-DIGAVIVSKM-DGYAMG---------GGSLSAVAATKSSVIFIGT 256

Query: 595 GQSYTDLKKLNVKSIVKTLL 614
           G+   + +   VK  V +LL
Sbjct: 257 GEHMDEFEVFEVKPFVSSLL 276


>Medtr8g032480.1 | signal recognition particle protein | HC |
           chr8:12458856-12456172 | 20130731
          Length = 196

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 22/185 (11%)

Query: 440 VMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPA-LVAKEAIQEASRN------GS 492
           +++AA DTFR+ A +QL   A R    I     EK  A  V  +A++   R       G 
Sbjct: 23  ILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGV 82

Query: 493 DVVLVDTAGRMQDNEPLM---RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 549
            V+        +  E L+   +A++K++    P+ +L V +   G + + Q  +FN+ + 
Sbjct: 83  HVIFSGLHTNYRLMEELISCKKAVAKVV-AGAPNEILLVLDGTTGLNMLPQAREFNEVVG 141

Query: 550 DLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSI 609
                     + G++LTK D    + G  +S+V   G PV FVG G+   DL+  + ++ 
Sbjct: 142 ----------VTGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAF 190

Query: 610 VKTLL 614
           V  + 
Sbjct: 191 VNAIF 195