Miyakogusa Predicted Gene

Lj4g3v1983420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983420.1 tr|I1P547|I1P547_ORYGL Ubiquitin
carboxyl-terminal hydrolase OS=Oryza glaberrima PE=3
SV=1,40.54,1e-17,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; seg,NULL,CUFF.50041.1
         (486 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130940.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   308   6e-84
Medtr4g130940.2 | ubiquitin carboxyl-terminal hydrolase | HC | c...   228   1e-59

>Medtr4g130940.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr4:54601732-54593972 | 20130731
          Length = 855

 Score =  308 bits (790), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 221/516 (42%), Positives = 274/516 (53%), Gaps = 56/516 (10%)

Query: 1   MWYTLDDNRVSHVSEREVLNQQAYMLFYVRDRKSIVSRKSLDIVKN--------GIRDSS 52
           MWYTLDD RVSHV E+EVLNQQAYMLFYVRD+KSI  RK ++I K         G R  S
Sbjct: 366 MWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIAKEEISKTNVIGSRYPS 425

Query: 53  TSNHVSKEYPNGLVEP-----SLSAETMKNMSNADLLEVS-VLKEQKSSVILAESRKQDK 106
           T  +  K+YPNG VE       L+AET KN+ NAD   +S  L +QK+S ILA+S   ++
Sbjct: 426 TPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRISDALIQQKNSGILAKSLMHNE 485

Query: 107 KPASELSSCA----------QIKKDSPQGMSSVDQSKKDNHVSTDLKCLAAPVVDKTNMC 156
            P SE +S             + K   + +SS+D S KDN VS + KCL AP  DK N+ 
Sbjct: 486 TPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKDN-VSGNQKCLVAPAGDKPNLF 544

Query: 157 NKNEILKDDTKDSIVPDFISQYPEKTFVTKDAQDXXXXXXXXXXXXXXXXQPEVNRQAGA 216
            ++ +LK+     +V   +S    +TF+ K A D                  EV+  A  
Sbjct: 545 TEDTLLKEGVDSPLVEPIVSN--PQTFIGKHASDRTSPSDEKNSPA------EVDAVAAQ 596

Query: 217 SATGSMPTKAGIV--ENVVASQALVLNKPVSRSLDMERLXXXXXXXXXXXXXXYQASSMH 274
            +  ++   AG+V   N V  Q LVL     RSL    L              Y+ S M 
Sbjct: 597 DSVTNLSEHAGLVGTSNAVVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGSIMQ 656

Query: 275 LRPIFLYMTYTGQWXXXXXXXXXXXXLSMKNTYKEKLVKHVRVSSCLESKATKAGYRKFN 334
           L  I   M   G              L +K   KEKL K+   S    S + K   R   
Sbjct: 657 LSLIRPSMRCLGP-RKKNHKKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLR--- 712

Query: 335 DQSPMEIDTFRK---RVDENCALLATPQSSGCSTVVNQFAATQAYSLQDGKRDQMHNSLM 391
             S M+ D  R+   R+D+NCA+LAT           Q       SLQD KRDQM N+++
Sbjct: 713 -SSLMKHDAEREIINRMDQNCAVLAT---------ATQVENMSRCSLQDDKRDQMQNTVV 762

Query: 392 SMLTRGLEETVVARWDDVEIASSRVMDSRNDKIKDIGYVGDEWDEELDKGKRKKLRTFKH 451
              T+GLEETVVARWDDVE+ SS+ ++S+ D+I  IGYVGDEWDEE D GKRKKLR  K 
Sbjct: 763 ---TQGLEETVVARWDDVELPSSQALESKTDQIARIGYVGDEWDEEYDTGKRKKLRCLKQ 819

Query: 452 SFDGPNIFQEIATEKFKSKRAKLDHSSSAN-PPFRI 486
           SF GPNIFQEIATEK K KRAKLDHSS  N PP RI
Sbjct: 820 SFGGPNIFQEIATEKSKLKRAKLDHSSFRNHPPIRI 855


>Medtr4g130940.2 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr4:54601732-54593972 | 20130731
          Length = 801

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 232/462 (50%), Gaps = 55/462 (11%)

Query: 1   MWYTLDDNRVSHVSEREVLNQQAYMLFYVRDRKSIVSRKSLDIVKN--------GIRDSS 52
           MWYTLDD RVSHV E+EVLNQQAYMLFYVRD+KSI  RK ++I K         G R  S
Sbjct: 366 MWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIAKEEISKTNVIGSRYPS 425

Query: 53  TSNHVSKEYPNGLVE-----PSLSAETMKNMSNADLLEVS-VLKEQKSSVILAESRKQDK 106
           T  +  K+YPNG VE       L+AET KN+ NAD   +S  L +QK+S ILA+S   ++
Sbjct: 426 TPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRISDALIQQKNSGILAKSLMHNE 485

Query: 107 KPASELSSC----------AQIKKDSPQGMSSVDQSKKDNHVSTDLKCLAAPVVDKTNMC 156
            P SE +S             + K   + +SS+D S KDN VS + KCL AP  DK N+ 
Sbjct: 486 TPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKDN-VSGNQKCLVAPAGDKPNLF 544

Query: 157 NKNEILKDDTKDSIVPDFISQYPEKTFVTKDAQDXXXXXXXXXXXXXXXXQPEVNRQAGA 216
            ++ +LK+     +V   +S    +TF+ K A D                  EV+  A  
Sbjct: 545 TEDTLLKEGVDSPLVEPIVSN--PQTFIGKHASDRTSPSDEKNSPA------EVDAVAAQ 596

Query: 217 SATGSMPTKAGIV--ENVVASQALVLNKPVSRSLDMERLXXXXXXXXXXXXXXYQASSMH 274
            +  ++   AG+V   N V  Q LVL     RSL    L              Y+ S M 
Sbjct: 597 DSVTNLSEHAGLVGTSNAVVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGSIMQ 656

Query: 275 LRPIFLYMTYTGQWXXXXXXXXXXXXLSMKNTYKEKLVKHVRVSSCLESKATKAGYRKFN 334
           L  I   M   G              L +K   KEKL K+   S    S + K   R   
Sbjct: 657 LSLIRPSMRCLGP-RKKNHKKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLR--- 712

Query: 335 DQSPMEIDTFRK---RVDENCALLATPQSSGCSTVVNQFAATQAYSLQDGKRDQMHNSLM 391
             S M+ D  R+   R+D+NCA+LAT           Q       SLQD KRDQM N++ 
Sbjct: 713 -SSLMKHDAEREIINRMDQNCAVLAT---------ATQVENMSRCSLQDDKRDQMQNTV- 761

Query: 392 SMLTRGLEETVVARWDDVEIASSRVMDSRNDKIKDIGYVGDE 433
             +T+GLEETVVARWDDVE+ SS+ ++S+ D+I  IGYVGDE
Sbjct: 762 --VTQGLEETVVARWDDVELPSSQALESKTDQIARIGYVGDE 801