Miyakogusa Predicted Gene

Lj4g3v1983310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983310.1 tr|A9TI05|A9TI05_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_145843,47.92,2e-18,no description,Cytochrome c oxidase,
subunit VIb; COX6B,Cytochrome c oxidase, subunit VIb,CUFF.50028.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g131150.1 | cytochrome C oxidase, subunit VIb family prote...   166   3e-42
Medtr4g131150.2 | cytochrome C oxidase, subunit VIb family prote...   165   8e-42

>Medtr4g131150.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr4:54704652-54706631 | 20130731
          Length = 103

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 93/103 (90%), Gaps = 2/103 (1%)

Query: 1   MALEAYAA-GNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAEC 59
           MA EAYAA GN DKI +DVL KARE+CYKARDAFY+C++ + DKKPTEIA+VGL+YP EC
Sbjct: 1   MATEAYAAEGNGDKIQSDVLIKARESCYKARDAFYSCIENKCDKKPTEIATVGLLYPKEC 60

Query: 60  KRSRDEFVKQCRSSWVKHFDRQYCQNKRV-QRLLDDKGSRRGV 101
           ++SR++FVKQCRSSWVKHFDRQYCQNK+  QRLLDDKGSRRGV
Sbjct: 61  QQSRNQFVKQCRSSWVKHFDRQYCQNKKAQQRLLDDKGSRRGV 103


>Medtr4g131150.2 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr4:54704652-54706631 | 20130731
          Length = 116

 Score =  165 bits (418), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 92/102 (90%), Gaps = 2/102 (1%)

Query: 1   MALEAYAA-GNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAEC 59
           MA EAYAA GN DKI +DVL KARE+CYKARDAFY+C++ + DKKPTEIA+VGL+YP EC
Sbjct: 1   MATEAYAAEGNGDKIQSDVLIKARESCYKARDAFYSCIENKCDKKPTEIATVGLLYPKEC 60

Query: 60  KRSRDEFVKQCRSSWVKHFDRQYCQNKRV-QRLLDDKGSRRG 100
           ++SR++FVKQCRSSWVKHFDRQYCQNK+  QRLLDDKGSRRG
Sbjct: 61  QQSRNQFVKQCRSSWVKHFDRQYCQNKKAQQRLLDDKGSRRG 102