Miyakogusa Predicted Gene

Lj4g3v1969860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1969860.1 Non Characterized Hit- tr|B5ILM4|B5ILM4_9CHRO
Putative uncharacterized protein OS=Cyanobium sp. PCC
,34.72,1e-18,seg,NULL; DUF1817,Protein of unknown function
DUF1817,CUFF.49988.1
         (252 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116350.1 | chlororespiratory reduction protein | HC | chr...   385   e-107

>Medtr4g116350.1 | chlororespiratory reduction protein | HC |
           chr4:48173223-48176147 | 20130731
          Length = 245

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 203/220 (92%)

Query: 32  NPLASFRTPRTMLSQRGHVAVSVAFNPQGNFDLSLSDYDDAPEVTPPMPPSEGRFDVFID 91
           +PL SF +      QRG+VAVSVAFNPQGNFD+SL D DD  +V+PPMPP+EGRF+V ID
Sbjct: 25  SPLTSFLSLPISHHQRGNVAVSVAFNPQGNFDVSLFDEDDESKVSPPMPPTEGRFEVVID 84

Query: 92  NDAITRLDLSPFQSATGMKDPLSVKPKEFIDRTIGFTINYKKEDPRDPRELSEFPDIRLW 151
           NDAI+RLDL+PFQ+ATGMK+PLSV+P+EF++R+IGFTINY + DPRDPRELSE+PDIRLW
Sbjct: 85  NDAISRLDLTPFQAATGMKNPLSVRPQEFLERSIGFTINYTRPDPRDPRELSEYPDIRLW 144

Query: 152 FVRLDATYPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMKKVFVVYS 211
           FVRLDA YPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVM KVF+VYS
Sbjct: 145 FVRLDAAYPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMNKVFIVYS 204

Query: 212 WLKHHNIPKPELKANNMARMLGFGIGNELYDLVENHPLDL 251
           WLKHHNIPKPELKANNMARMLGFGIG+ELYDLVENHPLDL
Sbjct: 205 WLKHHNIPKPELKANNMARMLGFGIGSELYDLVENHPLDL 244