Miyakogusa Predicted Gene

Lj4g3v1958780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1958780.2 Non Characterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,68.68,0,Beta-Casp,Beta-Casp domain; RMMBL,RNA-metabolising
metallo-beta-lactamase; INTEGRATOR COMPLEX SUBUNI,CUFF.49992.2
         (296 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032500.1 | cleavage and polyadenylation specificity facto...   365   e-101
Medtr1g032500.2 | cleavage and polyadenylation specificity facto...   161   6e-40
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...    74   2e-13

>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 201/265 (75%), Gaps = 36/265 (13%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           VH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGHRL 
Sbjct: 304 VHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLT 363

Query: 94  SGKATKVDVDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALL 153
           SGK TKVD DPDTQIDVRCQIHQLAFS HTDSKGIMDLVKFLSPKHV+LVHG+KPKM  L
Sbjct: 364 SGKPTKVDTDPDTQIDVRCQIHQLAFSAHTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSL 423

Query: 154 KEKIHSELGIPCHDPANHETICISSTPYVKTEASGTFIQNCLNPNFKFQKCSSVDECDST 213
           KE+I SELGIPC  PAN+E + ISST YV  EAS TF +NCLNPNFKFQKCSS+D C+ST
Sbjct: 424 KERIDSELGIPCSHPANNEIVTISSTQYVNAEASDTFTKNCLNPNFKFQKCSSMDTCNST 483

Query: 214 LTEKNLMPELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLVME- 272
           L ++NL PE                                  LQV+DERVA+GVLVME 
Sbjct: 484 LIDRNLTPE----------------------------------LQVEDERVADGVLVMEN 509

Query: 273 -KTKKAKIVHQDELLLMLGEKKQGV 296
              KKAKIVH+DE+LLML EKK  V
Sbjct: 510 NNNKKAKIVHEDEILLMLDEKKHEV 534


>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 78/86 (90%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           VH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGHRL 
Sbjct: 304 VHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLT 363

Query: 94  SGKATKVDVDPDTQIDVRCQIHQLAF 119
           SGK TKVD DPDTQIDVRCQ+H +++
Sbjct: 364 SGKPTKVDTDPDTQIDVRCQVHFISY 389


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   +PGY V GT+   +++ +  +V +   
Sbjct: 329 GPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKTILN-EPKEVTLMNG 387

Query: 106 TQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSELG 162
               +  Q+H ++FS H DS      ++ L+P ++ILVHG   +M  LK+K+ ++  
Sbjct: 388 LSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFA 444