Miyakogusa Predicted Gene

Lj4g3v1958780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1958780.1 Non Characterized Hit- tr|C3ZLX0|C3ZLX0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,39.47,3e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; Beta-Casp,,CUFF.49992.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032500.2 | cleavage and polyadenylation specificity facto...   177   5e-45
Medtr1g032500.1 | cleavage and polyadenylation specificity facto...   160   4e-40
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...    49   3e-06

>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 83/91 (91%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           VH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGHRL 
Sbjct: 304 VHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLT 363

Query: 94  SGKATKVDVDPDTQIDVRCQVHFISYPFIYS 124
           SGK TKVD DPDTQIDVRCQVHFISYPFIY 
Sbjct: 364 SGKPTKVDTDPDTQIDVRCQVHFISYPFIYK 394


>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 78/86 (90%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           VH FERSM++APGPCVLFATPGM+ GGFSLEVFKHWAPSE NL+ LPGYC+AGTVGHRL 
Sbjct: 304 VHKFERSMLDAPGPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLT 363

Query: 94  SGKATKVDVDPDTQIDVRCQVHFISY 119
           SGK TKVD DPDTQIDVRCQ+H +++
Sbjct: 364 SGKPTKVDTDPDTQIDVRCQIHQLAF 389


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 46  GPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDVDPD 105
           GP V+ A+PG +  G S ++F  W   + N   +PGY V GT+   +++ +  +V +   
Sbjct: 329 GPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKTILN-EPKEVTLMNG 387

Query: 106 TQIDVRCQVHFISY 119
               +  QVH+IS+
Sbjct: 388 LSAPLHMQVHYISF 401