Miyakogusa Predicted Gene

Lj4g3v1934510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1934510.1 Non Characterized Hit- tr|I1MU29|I1MU29_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.98,0,SUBFAMILY NOT
NAMED,NULL; ARP2/3 COMPLEX 21 KD SUBUNIT,ARP2/3 complex, p21-Arc
subunit; Arp2/3 compl,CUFF.49975.1
         (174 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g115900.1 | actin-related protein 2/3 complex subunit 3 | ...   313   4e-86
Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC | s...   157   6e-39

>Medtr4g115900.1 | actin-related protein 2/3 complex subunit 3 | HC
           | chr4:47894323-47890943 | 20130731
          Length = 174

 Score =  313 bits (803), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/172 (88%), Positives = 159/172 (92%)

Query: 1   MVYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVD++G+N+ACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVDDEGINRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGESXXXXXXXXXX 120
           IKSPADKLLIYLTFYINVALK+LEG RTLAEGTKAIINLGLE VPVPGES          
Sbjct: 61  IKSPADKLLIYLTFYINVALKKLEGCRTLAEGTKAIINLGLENVPVPGESGFPFPGLFPL 120

Query: 121 XQSHKEAELFRNYLKQIREETSGRLLNVAYRPNGTPNKWWLAFAKRKFMNII 172
            QSHKEAELFRNYLKQIREETSGRLL+VAYRPNGTPNKWWLAFAKRKFMN+I
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNVI 172


>Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC |
           scaffold0320:12511-20285 | 20130731
          Length = 225

 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 80/88 (90%)

Query: 2   VYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFDI 61
           VYHSSFVD++GVN+ACGCPLLPLKSHIKG APVSDQDRTDIVDEAITFFRANVFFRNF+I
Sbjct: 136 VYHSSFVDDEGVNRACGCPLLPLKSHIKGHAPVSDQDRTDIVDEAITFFRANVFFRNFNI 195

Query: 62  KSPADKLLIYLTFYINVALKRLEGRRTL 89
           +SPADKLLIYLTFYIN A K L    T+
Sbjct: 196 ESPADKLLIYLTFYINAADKLLIALHTI 223