Miyakogusa Predicted Gene

Lj4g3v1932130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1932130.1 tr|A0C9X9|A0C9X9_PARTE Chromosome undetermined
scaffold_16, whole genome shotgun sequence
OS=Paramec,29.73,0.00000000000004,ATG_C,Autophagy-related, C-terminal;
GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN
SORTING-ASSOC,NODE_56425_length_416_cov_67.653847.path2.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007250.1 | vacuolar protein sorting-associated protein, p...   254   2e-68
Medtr4g123110.1 | calcium-dependent lipid-binding-like protein |...    50   9e-07

>Medtr2g007250.1 | vacuolar protein sorting-associated protein,
            putative | HC | chr2:875474-913892 | 20130731
          Length = 3509

 Score =  254 bits (648), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/136 (91%), Positives = 130/136 (95%)

Query: 1    MQSPTGLIMGMAQGTTSLLSNTLYAISDATSQFSKAARKGIVAFTYDDQAVSRVEKHQAT 60
            M+SPTGLIMGMA+GTTSLLSNTLYA+SDA SQFSK ARKGIVAFTYDDQ  SR+EK QAT
Sbjct: 3177 MRSPTGLIMGMAEGTTSLLSNTLYAVSDAASQFSKVARKGIVAFTYDDQIASRIEKQQAT 3236

Query: 61   VSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSGVALGITGLVAKPAASILEVTGK 120
            V+SDSKGVINEVLEGLTGLLQSPIRGAE+HGLPGVLSGVALGITGLVAKPAASILEVTGK
Sbjct: 3237 VASDSKGVINEVLEGLTGLLQSPIRGAEKHGLPGVLSGVALGITGLVAKPAASILEVTGK 3296

Query: 121  TALSIRNRSKPNQLRS 136
            TA SIRNRSKPNQLRS
Sbjct: 3297 TAQSIRNRSKPNQLRS 3312


>Medtr4g123110.1 | calcium-dependent lipid-binding-like protein | HC |
            chr4:50875754-50826418 | 20130731
          Length = 4257

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 39   KGIVAFTYDDQAVSRVEKHQATVSSDSKGVINE--------VLEGLTGLLQSPIRGAERH 90
            KG+ A + D + +   ++ ++    D   V+ E        +  G+TG+L  P+ GA+  
Sbjct: 3919 KGVAALSMDKKFIQSRQRQESKGVEDFGDVLREGGGAFAKGLFRGVTGILTKPLEGAKTS 3978

Query: 91   GLPGVLSGVALGITGLVAKPAASILEVTGKT 121
            G+ G + GV  GI G+ A+P + +L++  KT
Sbjct: 3979 GVEGFVQGVGRGIIGVAAQPVSGVLDLLSKT 4009