Miyakogusa Predicted Gene

Lj4g3v1893170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1893170.1 Non Characterized Hit- tr|C0PG81|C0PG81_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55.45,3e-19,seg,NULL;
GTP-BINDING PROTEIN 2,Nucleolar GTP-binding protein 2; GTP-BINDING
PROTEIN-RELATED,NULL,CUFF.49927.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079510.1 | nucleolar GTP-binding-like protein | HC | chr2...   117   3e-27
Medtr4g081850.1 | nucleolar GTP-binding-like protein | HC | chr4...    95   2e-20

>Medtr2g079510.1 | nucleolar GTP-binding-like protein | HC |
           chr2:33482137-33476593 | 20130731
          Length = 574

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 76/121 (62%), Gaps = 9/121 (7%)

Query: 1   MTAAKMVLHDWQRGKIPFFVPPPQQEDL--SEEPIVNGLDVDDGVDSNQASAAIKAIANV 58
           MTAAKM+LHDWQRGKIPFFVPPP+Q+ L  SEEP VNG+DVD+ VD NQASAAIKAIANV
Sbjct: 438 MTAAKMILHDWQRGKIPFFVPPPRQDALSESEEPNVNGIDVDEAVDHNQASAAIKAIANV 497

Query: 59  LXXXXXXXXXXXKXXXXXXXXXXXXXXXXXISGDSPD-GDVLDSDSDTSEQDPDTEVPYE 117
           L           +                  +   PD GD  D DSD SE+DP TEVP E
Sbjct: 498 L------SSQQQRNVPVQGDLYNENELDEETADQLPDTGDYTDEDSDASEEDPSTEVPSE 551

Query: 118 Q 118
           Q
Sbjct: 552 Q 552


>Medtr4g081850.1 | nucleolar GTP-binding-like protein | HC |
           chr4:31881653-31883769 | 20130731
          Length = 563

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 54/71 (76%), Gaps = 12/71 (16%)

Query: 1   MTAAKMVLHDWQRGKIPFFVPPPQQEDL--SEEPIVNGLD----------VDDGVDSNQA 48
           MTAAKM+LHDWQRGKIPFFVPPP+ EDL  SEEP VNG+D          VD+ VD  QA
Sbjct: 430 MTAAKMILHDWQRGKIPFFVPPPRLEDLSKSEEPNVNGIDVDEANVNGIAVDEAVDHYQA 489

Query: 49  SAAIKAIANVL 59
           SAAIKAIANVL
Sbjct: 490 SAAIKAIANVL 500