Miyakogusa Predicted Gene

Lj4g3v1881820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1881820.1 tr|G7JFC5|G7JFC5_MEDTR Telomere-associated
protein RIF1 OS=Medicago truncatula GN=MTR_4g115340 PE=4 ,74.59,0,ARM
repeat,Armadillo-type fold; seg,NULL; TELOMERE-ASSOCIATED PROTEIN
(RIF1),NULL; Rif1_N,Rap1-inter,CUFF.49900.1
         (1025 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g115340.1 | Rap1-interacting factor 1 amine-terminal prote...  1509   0.0  
Medtr4g115340.2 | Rap1-interacting factor 1 amine-terminal prote...  1281   0.0  
Medtr7g110110.1 | hypothetical protein | HC | chr7:45131273-4513...   171   4e-42

>Medtr4g115340.1 | Rap1-interacting factor 1 amine-terminal protein |
            HC | chr4:47626813-47620944 | 20130731
          Length = 1121

 Score = 1509 bits (3907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/1027 (73%), Positives = 860/1027 (83%), Gaps = 5/1027 (0%)

Query: 1    MAEEEIHEIHTLISSNDDSNKCSGYSTLLQFQQHSCLNPXXXXXXXXXXXXVIFSMLSDI 60
            M++EEI EI TLISSND+SNK SGYSTLLQFQQHSC+NP            +I S LSDI
Sbjct: 1    MSKEEILEIQTLISSNDNSNKSSGYSTLLQFQQHSCINPSSLQSLAQNSNSIISSTLSDI 60

Query: 61   SHHDEEIAAQALKCLGFMIYHPSVVSALRVDDADSILCSLAKLITTTKLKSACNLGVWCL 120
             HHDEEIAAQALKCLGFMIYHPS+VS LRVDD + +L SLAKLITTTKLK+ CNLGVWC 
Sbjct: 61   EHHDEEIAAQALKCLGFMIYHPSIVSELRVDDVNLVLDSLAKLITTTKLKTVCNLGVWCF 120

Query: 121  SVQQLGASLLVNHFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMRESSHIW 180
            SVQQLG S LV HFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMR+SSHIW
Sbjct: 121  SVQQLGVSFLVAHFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMRDSSHIW 180

Query: 181  APPIYRRLLSTDKREKDSSERCLLKIRSTVIPPSLDLSKVLVKDMKIKLLDGMKNLLDKG 240
            APPIYRR+LSTDKREKDSSERCLLKI S VIPPSL+LSKVLVKDMKIKLL+GMK+LLD G
Sbjct: 181  APPIYRRILSTDKREKDSSERCLLKISSIVIPPSLELSKVLVKDMKIKLLNGMKDLLDSG 240

Query: 241  MKIQAIRAWGWFVRILGSHAMKNRHLVNDLLKIPERTFTDLDPQVQIATQVAWEGLIDAL 300
             KIQA++AWGWF+R+LGSHA+KN+HLVND+LKIPERTFTD DPQVQIATQVAWEGLIDAL
Sbjct: 241  TKIQAVQAWGWFIRMLGSHALKNKHLVNDMLKIPERTFTDPDPQVQIATQVAWEGLIDAL 300

Query: 301  VHHPILGSEKNPPAEDNFLEKQHSIGRINCDNQANGFSKSIKLIMTPLIGIMSSKCDISV 360
            + HPIL SEK  P++D  L+KQHS  + NC +Q NG  KSIKLIMTPLIGI+SSKCDISV
Sbjct: 301  ISHPILVSEKKTPSKDTSLQKQHSSSKTNCVDQVNGIYKSIKLIMTPLIGIVSSKCDISV 360

Query: 361  HSSCLNTWCYLLHKLDTSINEPSMMKMVFEPILKAIFQNRPDSKTICLWNMGLDLFSDSI 420
            HSSCLNTWCYLLHKLDTS+NE S++KMV EPILK IFQN PDSKTI LWN+GLDL SDS+
Sbjct: 361  HSSCLNTWCYLLHKLDTSVNESSLIKMVLEPILKVIFQNGPDSKTIWLWNLGLDLLSDSV 420

Query: 421  SLKCRDATCNDIGLSVSGKCSWKQHSIRWLPWDISQLDFYLNMIYVLFCQASDTTVNCEH 480
            S KCRDA C + G S S K SWKQH IRWLPWDIS+LDFYL++I+V+  QAS  TV  +H
Sbjct: 421  SQKCRDAHCIETGHSSSDKSSWKQHPIRWLPWDISRLDFYLSIIFVIIRQASGATVTRDH 480

Query: 481  RSHVYDAALKLFIQILKGVKLDVESPSTNYDGIMGCMNSLLTFMKRVC-DFHPDGSESYE 539
            RSHVYDAALK+F  +LKGVKLD+ESPSTNYD ++ C+N+LLTF+K VC D + DGSE+Y+
Sbjct: 481  RSHVYDAALKIFKYVLKGVKLDMESPSTNYDAVICCLNTLLTFVKIVCEDLYSDGSENYD 540

Query: 540  VYCTSIKFIDAITKELGPSVLGSPLYKFSLDLKYINDLQSVDNNNDQKFPSVRCVSYMDK 599
            VY TS++FIDA+TKELG S+LGSPLYKF LDLKYIND+QSVD+N   KF +V C+ YMDK
Sbjct: 541  VYYTSLRFIDAVTKELGSSILGSPLYKFPLDLKYINDMQSVDHNKHLKFLTVNCICYMDK 600

Query: 600  VSPLVYLIALHFYMMVQLTTKSRQSDCISQGMCEYFKYIFSSSDPLENLLTCIGLMYKLV 659
            VSPLVYLI L+F+MMVQLT K +QSD ISQGM EYFK+IFSSS+ L+NLLTC GL+YK  
Sbjct: 601  VSPLVYLIVLYFHMMVQLTLKFQQSDHISQGMSEYFKFIFSSSNLLDNLLTCTGLLYKHA 660

Query: 660  QPIYLNIWITVAQGLNSCVDDANCKSLQEALSDSIGYSSICHFLIYPIMAHSEVSRLTST 719
            +PIYLNIW+ VAQGLN CV +ANCKSL+E+LSD   Y SICH LIYPI+AHSEV RLTS+
Sbjct: 661  EPIYLNIWVAVAQGLNYCVCNANCKSLKESLSDGNEYYSICHLLIYPIVAHSEVPRLTSS 720

Query: 720  NANASWEQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDE 779
            NA+ S E++PV  + K  LEL IQTWKSLYGSLSA GFGCST T FSGDLC L++R LDE
Sbjct: 721  NASGSMEKYPVSADEKPSLELVIQTWKSLYGSLSA-GFGCSTTTNFSGDLCKLINRWLDE 779

Query: 780  NTDLLGNDTDFKLTCNDIDLCVLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCS 839
            N  +LG+ TDFKLT NDIDL VLHLSGNFL+ ILEQIQT ELVSET RS+S CDSK L S
Sbjct: 780  NVSMLGSGTDFKLTYNDIDLGVLHLSGNFLICILEQIQTLELVSETSRSKSECDSKILYS 839

Query: 840  IRNCLKFSSKYMNVAF--RVTDPLPGFVGTSRLCSALTSFISCLHWKQYILLFMEILSCP 897
            I+NCL F+SKYM++     VTDP P FVGTSRL SAL  FI  LH KQ ILLF+EI+SCP
Sbjct: 840  IKNCLTFASKYMHLLRIKMVTDPPPSFVGTSRLSSALACFIDHLHRKQDILLFLEIISCP 899

Query: 898  LLQWLSN-AMQDERTSDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFEKTLDHSCP 956
            LLQWLSN  +Q+E T++ L LLW EIL+SLRRSQPP++FGS+LL LHEPLFEKTLDH  P
Sbjct: 900  LLQWLSNMGVQNEGTNNNLKLLWNEILSSLRRSQPPLHFGSALLELHEPLFEKTLDHPYP 959

Query: 957  SISEPTINFWNSTFAQQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKCEGIIIVGF 1016
            SISE TI FWNSTFAQQII DFPP LLHVLDKLSR GKLKLQ RS+ S +KC     VG 
Sbjct: 960  SISEATIEFWNSTFAQQIIFDFPPRLLHVLDKLSRQGKLKLQSRSISSFKKCNTREEVGD 1019

Query: 1017 TQRGAAI 1023
              +G  +
Sbjct: 1020 ALQGYRV 1026


>Medtr4g115340.2 | Rap1-interacting factor 1 amine-terminal protein
           | HC | chr4:47626740-47622603 | 20130731
          Length = 849

 Score = 1281 bits (3314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/850 (75%), Positives = 724/850 (85%), Gaps = 2/850 (0%)

Query: 1   MAEEEIHEIHTLISSNDDSNKCSGYSTLLQFQQHSCLNPXXXXXXXXXXXXVIFSMLSDI 60
           M++EEI EI TLISSND+SNK SGYSTLLQFQQHSC+NP            +I S LSDI
Sbjct: 1   MSKEEILEIQTLISSNDNSNKSSGYSTLLQFQQHSCINPSSLQSLAQNSNSIISSTLSDI 60

Query: 61  SHHDEEIAAQALKCLGFMIYHPSVVSALRVDDADSILCSLAKLITTTKLKSACNLGVWCL 120
            HHDEEIAAQALKCLGFMIYHPS+VS LRVDD + +L SLAKLITTTKLK+ CNLGVWC 
Sbjct: 61  EHHDEEIAAQALKCLGFMIYHPSIVSELRVDDVNLVLDSLAKLITTTKLKTVCNLGVWCF 120

Query: 121 SVQQLGASLLVNHFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMRESSHIW 180
           SVQQLG S LV HFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMR+SSHIW
Sbjct: 121 SVQQLGVSFLVAHFHSLLRAIVHALDNPMGSLSTTFEATQAIMKLSGQLSEQMRDSSHIW 180

Query: 181 APPIYRRLLSTDKREKDSSERCLLKIRSTVIPPSLDLSKVLVKDMKIKLLDGMKNLLDKG 240
           APPIYRR+LSTDKREKDSSERCLLKI S VIPPSL+LSKVLVKDMKIKLL+GMK+LLD G
Sbjct: 181 APPIYRRILSTDKREKDSSERCLLKISSIVIPPSLELSKVLVKDMKIKLLNGMKDLLDSG 240

Query: 241 MKIQAIRAWGWFVRILGSHAMKNRHLVNDLLKIPERTFTDLDPQVQIATQVAWEGLIDAL 300
            KIQA++AWGWF+R+LGSHA+KN+HLVND+LKIPERTFTD DPQVQIATQVAWEGLIDAL
Sbjct: 241 TKIQAVQAWGWFIRMLGSHALKNKHLVNDMLKIPERTFTDPDPQVQIATQVAWEGLIDAL 300

Query: 301 VHHPILGSEKNPPAEDNFLEKQHSIGRINCDNQANGFSKSIKLIMTPLIGIMSSKCDISV 360
           + HPIL SEK  P++D  L+KQHS  + NC +Q NG  KSIKLIMTPLIGI+SSKCDISV
Sbjct: 301 ISHPILVSEKKTPSKDTSLQKQHSSSKTNCVDQVNGIYKSIKLIMTPLIGIVSSKCDISV 360

Query: 361 HSSCLNTWCYLLHKLDTSINEPSMMKMVFEPILKAIFQNRPDSKTICLWNMGLDLFSDSI 420
           HSSCLNTWCYLLHKLDTS+NE S++KMV EPILK IFQN PDSKTI LWN+GLDL SDS+
Sbjct: 361 HSSCLNTWCYLLHKLDTSVNESSLIKMVLEPILKVIFQNGPDSKTIWLWNLGLDLLSDSV 420

Query: 421 SLKCRDATCNDIGLSVSGKCSWKQHSIRWLPWDISQLDFYLNMIYVLFCQASDTTVNCEH 480
           S KCRDA C + G S S K SWKQH IRWLPWDIS+LDFYL++I+V+  QAS  TV  +H
Sbjct: 421 SQKCRDAHCIETGHSSSDKSSWKQHPIRWLPWDISRLDFYLSIIFVIIRQASGATVTRDH 480

Query: 481 RSHVYDAALKLFIQILKGVKLDVESPSTNYDGIMGCMNSLLTFMKRVC-DFHPDGSESYE 539
           RSHVYDAALK+F  +LKGVKLD+ESPSTNYD ++ C+N+LLTF+K VC D + DGSE+Y+
Sbjct: 481 RSHVYDAALKIFKYVLKGVKLDMESPSTNYDAVICCLNTLLTFVKIVCEDLYSDGSENYD 540

Query: 540 VYCTSIKFIDAITKELGPSVLGSPLYKFSLDLKYINDLQSVDNNNDQKFPSVRCVSYMDK 599
           VY TS++FIDA+TKELG S+LGSPLYKF LDLKYIND+QSVD+N   KF +V C+ YMDK
Sbjct: 541 VYYTSLRFIDAVTKELGSSILGSPLYKFPLDLKYINDMQSVDHNKHLKFLTVNCICYMDK 600

Query: 600 VSPLVYLIALHFYMMVQLTTKSRQSDCISQGMCEYFKYIFSSSDPLENLLTCIGLMYKLV 659
           VSPLVYLI L+F+MMVQLT K +QSD ISQGM EYFK+IFSSS+ L+NLLTC GL+YK  
Sbjct: 601 VSPLVYLIVLYFHMMVQLTLKFQQSDHISQGMSEYFKFIFSSSNLLDNLLTCTGLLYKHA 660

Query: 660 QPIYLNIWITVAQGLNSCVDDANCKSLQEALSDSIGYSSICHFLIYPIMAHSEVSRLTST 719
           +PIYLNIW+ VAQGLN CV +ANCKSL+E+LSD   Y SICH LIYPI+AHSEV RLTS+
Sbjct: 661 EPIYLNIWVAVAQGLNYCVCNANCKSLKESLSDGNEYYSICHLLIYPIVAHSEVPRLTSS 720

Query: 720 NANASWEQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDE 779
           NA+ S E++PV  + K  LEL IQTWKSLYGSLSA GFGCST T FSGDLC L++R LDE
Sbjct: 721 NASGSMEKYPVSADEKPSLELVIQTWKSLYGSLSA-GFGCSTTTNFSGDLCKLINRWLDE 779

Query: 780 NTDLLGNDTDFKLTCNDIDLCVLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCS 839
           N  +LG+ TDFKLT NDIDL VLHLSGNFL+ ILEQIQT ELVSET RS+S CDSK L S
Sbjct: 780 NVSMLGSGTDFKLTYNDIDLGVLHLSGNFLICILEQIQTLELVSETSRSKSECDSKILYS 839

Query: 840 IRNCLKFSSK 849
           I+NCL F+SK
Sbjct: 840 IKNCLTFASK 849


>Medtr7g110110.1 | hypothetical protein | HC |
           chr7:45131273-45130594 | 20130731
          Length = 124

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 100/124 (80%), Gaps = 1/124 (0%)

Query: 726 EQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDENTDLLG 785
           E++PV  + K  LEL IQTWKSLYGSLSA GFGCST T FSGDLC L++R LDEN  +LG
Sbjct: 2   EKYPVSADEKPSLELVIQTWKSLYGSLSA-GFGCSTTTNFSGDLCKLINRWLDENVSMLG 60

Query: 786 NDTDFKLTCNDIDLCVLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCSIRNCLK 845
           + T FKLT NDIDL VLHLSGNFL+ ILEQIQT ELVSET RS+S CDSK L SI+NCL 
Sbjct: 61  SSTAFKLTYNDIDLGVLHLSGNFLICILEQIQTLELVSETSRSKSECDSKILYSIKNCLT 120

Query: 846 FSSK 849
           F+SK
Sbjct: 121 FASK 124