Miyakogusa Predicted Gene

Lj4g3v1881780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1881780.1 Non Characterized Hit- tr|D8RTY6|D8RTY6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,31.66,1e-17,SNAPc_SNAP43,Small nuclear RNA activating complex
(SNAPc), subunit SNAP43; SMALL NUCLEAR RNA ACTIVAT,CUFF.49907.1
         (279 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g115320.1 | small nuclear RNA activating complex (SNAPc), ...   324   6e-89
Medtr4g115320.2 | small nuclear RNA activating complex (SNAPc), ...   324   6e-89
Medtr3g113180.1 | small nuclear RNA activating complex (SNAPc), ...   297   8e-81

>Medtr4g115320.1 | small nuclear RNA activating complex (SNAPc),
           subunit SNAP43 | HC | chr4:47607868-47612751 | 20130731
          Length = 273

 Score =  324 bits (830), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/254 (64%), Positives = 186/254 (73%), Gaps = 1/254 (0%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN D FKKDIDELI QFAQDES TLADMKRVW+SKKFSYIYEA PS NLAFFMQSLYAH 
Sbjct: 1   MNTDNFKKDIDELIDQFAQDESKTLADMKRVWISKKFSYIYEASPSKNLAFFMQSLYAHC 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IGYMV  GSLS +           ETQPFKPPFK+Y+SLGELK +RIL            
Sbjct: 61  IGYMVSNGSLSYKLGGLYCLYCLYETQPFKPPFKVYISLGELKNLRILVIDAKANDIGVV 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                RMLE N FLFGAVDLAE + TETV        A I+ AYE LF + PI +Y+ MD
Sbjct: 121 PALVKRMLESNTFLFGAVDLAECSATETVNQLEQLQKARIQAAYEKLFDSMPIENYVRMD 180

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           LG+EVDLN LKK+S+EYAEAK++A KEASSILD +NIK I+ +KEL +GDV E+IA DW 
Sbjct: 181 LGLEVDLNLLKKMSAEYAEAKNVAIKEASSILDVQNIKHISEDKEL-IGDVVEKIAGDWH 239

Query: 241 IQKQAFYKQTGLGE 254
           +QKQ FYKQTGLGE
Sbjct: 240 VQKQTFYKQTGLGE 253


>Medtr4g115320.2 | small nuclear RNA activating complex (SNAPc),
           subunit SNAP43 | HC | chr4:47607868-47612751 | 20130731
          Length = 303

 Score =  324 bits (830), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/254 (64%), Positives = 186/254 (73%), Gaps = 1/254 (0%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN D FKKDIDELI QFAQDES TLADMKRVW+SKKFSYIYEA PS NLAFFMQSLYAH 
Sbjct: 31  MNTDNFKKDIDELIDQFAQDESKTLADMKRVWISKKFSYIYEASPSKNLAFFMQSLYAHC 90

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IGYMV  GSLS +           ETQPFKPPFK+Y+SLGELK +RIL            
Sbjct: 91  IGYMVSNGSLSYKLGGLYCLYCLYETQPFKPPFKVYISLGELKNLRILVIDAKANDIGVV 150

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                RMLE N FLFGAVDLAE + TETV        A I+ AYE LF + PI +Y+ MD
Sbjct: 151 PALVKRMLESNTFLFGAVDLAECSATETVNQLEQLQKARIQAAYEKLFDSMPIENYVRMD 210

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           LG+EVDLN LKK+S+EYAEAK++A KEASSILD +NIK I+ +KEL +GDV E+IA DW 
Sbjct: 211 LGLEVDLNLLKKMSAEYAEAKNVAIKEASSILDVQNIKHISEDKEL-IGDVVEKIAGDWH 269

Query: 241 IQKQAFYKQTGLGE 254
           +QKQ FYKQTGLGE
Sbjct: 270 VQKQTFYKQTGLGE 283


>Medtr3g113180.1 | small nuclear RNA activating complex (SNAPc),
           subunit SNAP43 | HC | chr3:52893148-52888601 | 20130731
          Length = 267

 Score =  297 bits (760), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 182/256 (71%), Gaps = 11/256 (4%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+D FKKDI ELI QF QDES TLADMKRVW+SKKFSYIYEA PST LAF MQSLYAH 
Sbjct: 1   MNMDCFKKDIGELIAQFTQDESKTLADMKRVWISKKFSYIYEACPSTKLAFIMQSLYAHC 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IGYMV   SLS R           ETQPFKPPFK+Y+SLGELK + IL            
Sbjct: 61  IGYMVSNVSLSQRLGGLYCLYCLYETQPFKPPFKVYISLGELKNLSILVIDAKANGIGVV 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAY--ETLFKNTPINDYIH 178
                RMLERN FLFGAVDLAE +VTET+          + V +  + LF +TPI +Y+ 
Sbjct: 121 PTSVKRMLERNTFLFGAVDLAESSVTETLI--------CLNVFHLDDRLFDSTPIENYVR 172

Query: 179 MDLGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIAND 238
           M+LGMEVDL+ LKK+S+EYAEAK++A KEASSILD +NIK IA +KEL +G + E I++D
Sbjct: 173 MNLGMEVDLSLLKKMSAEYAEAKNVAIKEASSILDVQNIKHIAEDKEL-IGVLVEMISDD 231

Query: 239 WVIQKQAFYKQTGLGE 254
           W +QKQ FYKQTGLGE
Sbjct: 232 WRVQKQTFYKQTGLGE 247