Miyakogusa Predicted Gene

Lj4g3v1880950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880950.1 tr|F2E072|F2E072_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,57.69,0.000000000000002,seg,NULL,CUFF.49860.1
         (231 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0339s0030.1 | thylakoid lumenal 16.5 kDa protein | HC | sca...   249   2e-66

>Medtr0339s0030.1 | thylakoid lumenal 16.5 kDa protein | HC |
           scaffold0339:14781-17495 | 20130731
          Length = 234

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 152/231 (65%), Gaps = 8/231 (3%)

Query: 1   MATNILSTANPFXXXXXXXXXXXXXXXXXATLTHVHHHIKCSVKRQLTLCKAVNQTALPT 60
           MA+N LSTANPF                  T T+ ++ IKC++KRQLT CK VNQ +L +
Sbjct: 12  MASNFLSTANPFHLASSSQSSL-------VTPTYAYNPIKCNLKRQLTPCKVVNQPSL-S 63

Query: 61  LTKRDLSISFFTSFVLSLAGKGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVISSS 120
           +TKRD+SI F TS VLSL+GKG                               QGVISSS
Sbjct: 64  VTKRDISIGFMTSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSS 123

Query: 121 TKETGYLQDVVYKLSEVGQAIENNDLSTAGSVFGRGKDTDWVQKANIALNKLSSSPEEKS 180
           TKETGYLQD+VYKLSEVGQAIE NDL++AGSV G+GKD DWVQKANIALNKLSSSPEEKS
Sbjct: 124 TKETGYLQDLVYKLSEVGQAIEQNDLTSAGSVLGKGKDADWVQKANIALNKLSSSPEEKS 183

Query: 181 EADTFXXXXXXXXXXXXQKDVESSKLAFVSSASAFEKWTSLTGLVAQLKGL 231
           E DTF            Q DVESSK+AFVSSASA EKWTSLTGLV +LKG+
Sbjct: 184 EVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI 234