Miyakogusa Predicted Gene

Lj4g3v1880850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880850.1 Non Characterized Hit- tr|C6SYG8|C6SYG8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2865
PE=,91.58,0,YABBY,YABBY protein; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.49822.1
         (190 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114730.1 | plant-specific transcription factor YABBY fami...   343   8e-95
Medtr2g087740.1 | plant-specific transcription factor YABBY fami...   184   4e-47
Medtr4g025900.1 | plant-specific transcription factor YABBY fami...   169   2e-42
Medtr4g050300.1 | plant-specific transcription factor YABBY fami...   164   6e-41
Medtr4g101660.1 | plant-specific transcription factor YABBY fami...   162   1e-40
Medtr5g034030.1 | YABBY transcription factor | HC | chr5:1470182...   150   7e-37
Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-lik...   122   1e-28

>Medtr4g114730.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:47236664-47232867 | 20130731
          Length = 191

 Score =  343 bits (879), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 166/192 (86%), Positives = 180/192 (93%), Gaps = 3/192 (1%)

Query: 1   MSTCGIIDVAPAS-EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA 59
           MS+C I DVAPA+ EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA
Sbjct: 1   MSSCSI-DVAPAAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA 59

Query: 60  FQSLSWQNLQAPGHC-NPEYRIDTGSTSKCNNRLAMRAPTTHHVTEERIVNRPPEKRQRV 118
           FQSLSWQ++QAP HC NPEYRI T ST KCN+R+AMR+  T HVTEER+VNRPPEKRQRV
Sbjct: 60  FQSLSWQDVQAPSHCMNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQRV 119

Query: 119 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENNNQAKMDNVSE 178
           PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+NNQA+++NVSE
Sbjct: 120 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAQIENVSE 179

Query: 179 KHLMSRAALLNK 190
           K LMSR+AL+NK
Sbjct: 180 KRLMSRSALMNK 191


>Medtr2g087740.1 | plant-specific transcription factor YABBY family
           protein | HC | chr2:36921389-36915323 | 20130731
          Length = 195

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/178 (56%), Positives = 125/178 (70%), Gaps = 9/178 (5%)

Query: 7   IDVAPASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAA-AFQSLSW 65
           +++   +E++CY+ CNFCN  LAVSVPCSSL  IVTVRCGHC NL SVNM A + QS + 
Sbjct: 5   MNMMATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGATSLQSFTP 64

Query: 66  QN----LQAPGHCNPE-YRIDTGSTSKCNNRLAMRAPTTHHVTEERIVN---RPPEKRQR 117
           Q      Q   +C+ E  R +   +S  ++  + +      +  E+      RPPEKRQR
Sbjct: 65  QQDHPQKQQLINCHQEASRKEVVGSSSSSSSSSSKCKAFQPLVHEQPRTPPIRPPEKRQR 124

Query: 118 VPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENNNQAKMDN 175
           VPSAYN+FIKEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ + QAK+D+
Sbjct: 125 VPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDH 182


>Medtr4g025900.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:8885604-8888552 | 20130731
          Length = 221

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 117/182 (64%), Gaps = 15/182 (8%)

Query: 16  LCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQNLQAPGHCN 75
           LCY+ CNFC+ VLAVSVPC+SLF  VTVRCGHCTNL SVNM A       Q      + N
Sbjct: 25  LCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAPNQLHLGHTYFN 84

Query: 76  PEYRID----TGSTSKCNNRL---------AMRAPTTHHVTEERIVNRPPEKRQRVPSAY 122
           P+  ++      ST+   N+L          MR      + +    NRPPEKRQRVPSAY
Sbjct: 85  PQTLMEEIRNAPSTNMMMNQLPNPNDLMMNTMRGGHHEEIPKPPPANRPPEKRQRVPSAY 144

Query: 123 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENN--NQAKMDNVSEKH 180
           N+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM ++    +A +   SE  
Sbjct: 145 NRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDV 204

Query: 181 LM 182
           LM
Sbjct: 205 LM 206


>Medtr4g050300.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:17796569-17804302 | 20130731
          Length = 179

 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 111/173 (64%), Gaps = 21/173 (12%)

Query: 12  ASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQNLQAP 71
           A+E++CY+ CNFCN +LAV+VP SSL  IVTVRCGHC NL SVNM A             
Sbjct: 7   ATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQ 66

Query: 72  GHCNPEYRIDTGSTS--------KCNNRLAMRAPTTHHVTEERIVN-RPPEKRQRVPSAY 122
                ++ ID  ++S        KCN   +  A     V   RI   RP EKR RVPSAY
Sbjct: 67  P--QKQHIIDEEASSKEIGSSSSKCNKIASFEA-----VEHPRIPPIRPIEKRHRVPSAY 119

Query: 123 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENNNQAKMDN 175
           N+FIKEEIQRIKA+NPDISHREAFS+AAKNWAHFPHIHFG       QAK+D+
Sbjct: 120 NRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFG-----KQQAKLDH 167


>Medtr4g101660.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:42026521-42023461 | 20130731
          Length = 218

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 111/170 (65%), Gaps = 13/170 (7%)

Query: 8   DVAPASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF-----QS 62
           D  P SEQLCY+ C  C+ +LAVSVPC+SLF  VTVRCGHCTNL  VNM A       Q 
Sbjct: 12  DHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQF 71

Query: 63  LSWQNLQAPGHCNPEYRIDTGSTSKCNNRL----AMRAPTTHHVTEE----RIVNRPPEK 114
               +  +P H N    +   + +   N +        P T  V +E     I+NRPPEK
Sbjct: 72  HLGHSFFSPTHHNLLEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRPPEK 131

Query: 115 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 164
           RQRVPSAYN+FIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 132 RQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLM 181


>Medtr5g034030.1 | YABBY transcription factor | HC |
           chr5:14701820-14703695 | 20130731
          Length = 217

 Score =  150 bits (379), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 103/156 (66%), Gaps = 17/156 (10%)

Query: 14  EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA----FQSL-SWQNL 68
           EQ+CY+ C FCN +L VSVPCSSL  +VTVRCGHCT+L SVNM  A    F  L S  +L
Sbjct: 12  EQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHL 71

Query: 69  QAPGHCNPEYRIDTGSTSKCNNRLAMRAPTTHHVTEE-------RIVNRPPEKRQRVPSA 121
           +     +P+   D   T   N   +M    T+   EE        +VN+PPEKRQR PSA
Sbjct: 72  EQKESSSPDE--DANKTLNSNTSASM---MTYSDCEEDDVIPISNVVNKPPEKRQRTPSA 126

Query: 122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 157
           YN+FIKEEI+R+KA NPD++H+EAFSTAAKNWA+ P
Sbjct: 127 YNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCP 162


>Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-like
           protein | HC | chr5:20267886-20271029 | 20130731
          Length = 216

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 13/155 (8%)

Query: 7   IDVAPASEQ-LCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNM---AAAFQS 62
           +D+ P S+Q LCY+ CNFCN VLAV +PC  L D VTV+CGHC+NL  +     ++  Q+
Sbjct: 9   MDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPSSKNQT 68

Query: 63  LSWQ-NLQAPGHCNPEYRIDTGSTSKCNNRLAMRAPTTHHVTEERIVNRPPEKRQRVPSA 121
           +    +LQ            + S +     L+ R P          V +PPEK+ R+PSA
Sbjct: 69  VDHTLSLQGIYSSKKGQPSSSSSPTTSTESLSPRPPP--------FVVKPPEKKHRLPSA 120

Query: 122 YNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 156
           YN+F+KEEIQRIK  NP I HREAFS AAKNWA +
Sbjct: 121 YNRFMKEEIQRIKVANPQIPHREAFSAAAKNWARY 155