Miyakogusa Predicted Gene
- Lj4g3v1880730.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1880730.2 Non Characterized Hit- tr|F6HT74|F6HT74_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.01,0.000008,TPR_REGION,Tetratricopeptide repeat-containing
domain; TPR_11,NULL; TPR-like,NULL; no description,Te,CUFF.49825.2
(293 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g114690.1 | TPR repeat protein | HC | chr4:47200290-472018... 295 3e-80
Medtr2g103795.1 | TPR repeat protein | HC | chr2:44688706-446946... 172 5e-43
Medtr4g010250.1 | TPR repeat protein | HC | chr4:2308253-2305617... 168 7e-42
Medtr7g098450.1 | TPR repeat protein | HC | chr7:39412668-394107... 141 9e-34
Medtr7g098450.2 | TPR repeat protein | HC | chr7:39412635-394103... 140 1e-33
Medtr7g099260.1 | TPR repeat protein | HC | chr7:39789340-397912... 133 2e-31
Medtr7g099260.2 | TPR repeat protein | HC | chr7:39789442-397912... 133 2e-31
Medtr2g103795.2 | TPR repeat protein | HC | chr2:44688706-446901... 130 1e-30
Medtr5g029910.1 | TPR repeat protein | HC | chr5:12584803-125828... 123 2e-28
Medtr1g073230.1 | O-linked N-acetylglucosamine transferase, ogt ... 102 4e-22
Medtr3g463450.1 | TPR superfamily protein | HC | chr3:25403273-2... 84 1e-16
Medtr5g082130.1 | hypothetical protein | HC | chr5:35259864-3525... 72 5e-13
>Medtr4g114690.1 | TPR repeat protein | HC | chr4:47200290-47201853
| 20130731
Length = 292
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/289 (60%), Positives = 202/289 (69%), Gaps = 20/289 (6%)
Query: 1 MLLQSSSTPIMNSFLPH--SKDPSTEPEHLHRIPRTRSVTLSGSWS------PIEGRRSR 52
MLL+SSSTP+MN ++PH SKD S EPE LHRIP++RSVTLS S S PI G S+
Sbjct: 1 MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60
Query: 53 MTRALSETDLTAAPKRKPPSHGLFDEDE--GKASTLAARSRTTSLGPALFSFSELEEGVS 110
MTRALSETDL++ RKP FDEDE + T ARSRT S AL S +E EE S
Sbjct: 61 MTRALSETDLSSQLNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLTEFEESQS 120
Query: 111 GIGVRDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYRTMIEA 170
+ RD G + V F D NHG+DSTDLYYRTMIEA
Sbjct: 121 EVDARDGGSMLVLVEEGGGGGFDKNDGGVSR--------FGDSNHGNDSTDLYYRTMIEA 172
Query: 171 NPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRA 230
NPGNPLFL NYA+YLKEVR DYVKAEEYCG+AILANPNDG V+S+YADLIWE +KDA RA
Sbjct: 173 NPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRA 232
Query: 231 ETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSLSFFHG 279
ETY+DQAVKA+PDDCYVLASYAHFLWDA+E + E+E+ +EKS FF+G
Sbjct: 233 ETYFDQAVKAAPDDCYVLASYAHFLWDADE--EEEEEDEAEKSFGFFNG 279
>Medtr2g103795.1 | TPR repeat protein | HC | chr2:44688706-44694656
| 20130731
Length = 275
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 152/280 (54%), Gaps = 35/280 (12%)
Query: 1 MLLQSSSTPIMNSFLPHSKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALSET 60
MLL+S S PI +SFLPHS + S+E E H +PRT
Sbjct: 1 MLLRSYSAPIPSSFLPHSMESSSEQELNHHLPRT-------------------------- 34
Query: 61 DLTAAPKRKPPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSELE-------EGVSGIG 113
A+P+ K + L + + + + +TT LFS S L+ EG +G
Sbjct: 35 --LASPRHKKTAPLLKNHHQEEIEQKFHKKKTTPSMRELFSSSSLDKQVLYHDEGGKKVG 92
Query: 114 VRDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYRTMIEANPG 173
++ + W+ N+G D TD YY+ MIEANP
Sbjct: 93 KLQTLVMGGGGMGCDGGSICGGCNGSGRDSGGGNGNGWENNYGRDETDAYYQNMIEANPN 152
Query: 174 NPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETY 233
N L L NYA++LKEVR DY KAEEY +AILA+P+D + +S+YADLIW++ K+A RAE Y
Sbjct: 153 NSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLIWQTEKNADRAEAY 212
Query: 234 YDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKS 273
+D+A+++ P+DCYVLASYA FLWDAEED+D + ++ ++KS
Sbjct: 213 FDRAIQSDPNDCYVLASYAKFLWDAEEDEDNDCQHKTDKS 252
>Medtr4g010250.1 | TPR repeat protein | HC | chr4:2308253-2305617 |
20130731
Length = 253
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 145/270 (53%), Gaps = 50/270 (18%)
Query: 1 MLLQSSSTPIMNSFLPH-SKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALSE 59
MLL+SSS PI++S LP+ SK+ S E EH ++PRT S +++ L++
Sbjct: 1 MLLRSSSAPILSSLLPYNSKESSLELEHTLKLPRTISFL-------------SLSQNLAK 47
Query: 60 TDL--TAAPKRK---PPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSELEEGVSGIGV 114
DL +++PK+ P S+ L K A+ TS V G GV
Sbjct: 48 LDLQNSSSPKKPFLVPCSNVLSTNMNEKNKVKEAKMVQTS--------------VMGGGV 93
Query: 115 RDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKN-HGSDSTDLYYRTMIEANPG 173
R G W+ N HG D D YY+ MIEA+P
Sbjct: 94 RSNGGCKGGGRGSDGGNGRG----------------WNFNDHGRDRLDAYYQNMIEAHPC 137
Query: 174 NPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETY 233
+ L L NY ++LKEV DY KAEE +AILANP DG VMS+YADLIWE+ K+A RA+ Y
Sbjct: 138 DALLLGNYGKFLKEVCGDYAKAEECLERAILANPGDGHVMSIYADLIWETKKNAARAQQY 197
Query: 234 YDQAVKASPDDCYVLASYAHFLWDAEEDDD 263
+DQA+++ P+DCYVLASYA FLWDAE ++D
Sbjct: 198 FDQAIQSDPNDCYVLASYAKFLWDAENEED 227
>Medtr7g098450.1 | TPR repeat protein | HC | chr7:39412668-39410728
| 20130731
Length = 376
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
D NHG + YY+ M++ NPGNPLFL NYA++L + + D AEEY +AILA+PNDGE
Sbjct: 244 DSNHGVEE---YYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDGE 300
Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSE 271
V+S Y L+WE ++D RA +Y+++AV+ASPDD +V A+YA FLWD EED+D N +
Sbjct: 301 VLSQYGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYASFLWDTEEDEDAAGSNDPQ 360
Query: 272 KSLSFFH 278
FH
Sbjct: 361 CLPQHFH 367
>Medtr7g098450.2 | TPR repeat protein | HC | chr7:39412635-39410361
| 20130731
Length = 353
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
D NHG + YY+ M++ NPGNPLFL NYA++L + + D AEEY +AILA+PNDGE
Sbjct: 221 DSNHG---VEEYYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDGE 277
Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSE 271
V+S Y L+WE ++D RA +Y+++AV+ASPDD +V A+YA FLWD EED+D N +
Sbjct: 278 VLSQYGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYASFLWDTEEDEDAAGSNDPQ 337
Query: 272 KSLSFFH 278
FH
Sbjct: 338 CLPQHFH 344
>Medtr7g099260.1 | TPR repeat protein | HC | chr7:39789340-39791288
| 20130731
Length = 363
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
+ NHG + YY+ M++ NPGNPLFL NYA++L + + D AEEY +AILA+PNDGE
Sbjct: 232 NNNHG---VEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYYSRAILADPNDGE 288
Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDV 264
V+S Y L+WE + D RA +Y+++AV+ASP+D +V A+YA FLWD EE++D
Sbjct: 289 VLSQYGKLVWELHHDEERASSYFERAVQASPEDSHVQAAYASFLWDTEEENDA 341
>Medtr7g099260.2 | TPR repeat protein | HC | chr7:39789442-39791288
| 20130731
Length = 363
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
+ NHG + YY+ M++ NPGNPLFL NYA++L + + D AEEY +AILA+PNDGE
Sbjct: 232 NNNHG---VEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYYSRAILADPNDGE 288
Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDV 264
V+S Y L+WE + D RA +Y+++AV+ASP+D +V A+YA FLWD EE++D
Sbjct: 289 VLSQYGKLVWELHHDEERASSYFERAVQASPEDSHVQAAYASFLWDTEEENDA 341
>Medtr2g103795.2 | TPR repeat protein | HC | chr2:44688706-44690159
| 20130731
Length = 224
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 127/251 (50%), Gaps = 35/251 (13%)
Query: 1 MLLQSSSTPIMNSFLPHSKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALSET 60
MLL+S S PI +SFLPHS + S+E E H +PRT
Sbjct: 1 MLLRSYSAPIPSSFLPHSMESSSEQELNHHLPRT-------------------------- 34
Query: 61 DLTAAPKRKPPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSELE-------EGVSGIG 113
A+P+ K + L + + + + +TT LFS S L+ EG +G
Sbjct: 35 --LASPRHKKTAPLLKNHHQEEIEQKFHKKKTTPSMRELFSSSSLDKQVLYHDEGGKKVG 92
Query: 114 VRDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYRTMIEANPG 173
++ + W+ N+G D TD YY+ MIEANP
Sbjct: 93 KLQTLVMGGGGMGCDGGSICGGCNGSGRDSGGGNGNGWENNYGRDETDAYYQNMIEANPN 152
Query: 174 NPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETY 233
N L L NYA++LKEVR DY KAEEY +AILA+P+D + +S+YADLIW++ K+A RAE Y
Sbjct: 153 NSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLIWQTEKNADRAEAY 212
Query: 234 YDQAVKASPDD 244
+D+A+++ P+D
Sbjct: 213 FDRAIQSDPND 223
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 198 YCGKAILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWD 257
Y I ANPN+ ++ YA + E D +AE Y ++A+ ASP D L+ YA +W
Sbjct: 142 YYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLIWQ 201
Query: 258 AEEDDD 263
E++ D
Sbjct: 202 TEKNAD 207
>Medtr5g029910.1 | TPR repeat protein | HC | chr5:12584803-12582810
| 20130731
Length = 253
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 163 YYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWE 222
YY M+++NP + L L NY +YL EV + V+AEEY G+AILANP D E++S+Y LIWE
Sbjct: 125 YYEEMLKSNPADALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDAELLSLYGKLIWE 184
Query: 223 SYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDA 258
+D RA++Y+DQA+ PDD VL SYAHF+W+A
Sbjct: 185 MSRDEERAKSYFDQAIHVDPDDSTVLGSYAHFMWEA 220
>Medtr1g073230.1 | O-linked N-acetylglucosamine transferase, ogt
protein, putative | HC | chr1:32490728-32494156 |
20130731
Length = 376
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Query: 163 YYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWE 222
YY+ M+ P +PL L YA +L+ + + AEEY +A LA+PNDGE++ YA L+WE
Sbjct: 132 YYKIMVHDYPSHPLILKKYAHFLQ-GKGELQDAEEYFHRATLADPNDGEILMHYAKLVWE 190
Query: 223 SYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKS 273
++ D RA Y+++A KASP D VLA+YA FLW+ EDD+ E EN + ++
Sbjct: 191 NHHDRDRASVYFERAAKASPQDSDVLAAYASFLWET-EDDENESENHTTQN 240
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 154 NHGSDSTDL-YYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEV 212
N+ DS D Y + MI NP NPLFL YA++L + D AE+Y +AI A+P+DGE
Sbjct: 266 NYSEDSNDADYLKKMINENPNNPLFLKKYAQFLFQSNRDLEAAEDYYSRAISADPSDGET 325
Query: 213 MSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
+S YA L W+ + D +A + ++QAVKA+P D VLA+Y FLW+ E+++
Sbjct: 326 ISEYAKLQWQLHHDQEKALSLFEQAVKATPGDSNVLAAYTCFLWETEDEE 375
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 48/167 (28%)
Query: 151 WDKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAE-------------- 196
W+ +H D +Y+ +A+P + L+ YA +L E D ++E
Sbjct: 189 WENHHDRDRASVYFERAAKASPQDSDVLAAYASFLWETEDDENESENHTTQNDMEKQETK 248
Query: 197 --------------------------EYCGKAILANPNDGEVMSMYADLIWESYKDATRA 230
+Y K I NPN+ + YA +++S +D A
Sbjct: 249 PINTANEENGAEKLATANYSEDSNDADYLKKMINENPNNPLFLKKYAQFLFQSNRDLEAA 308
Query: 231 ETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSSEKSLSFF 277
E YY +A+ A P D ++ YA W D EK+LS F
Sbjct: 309 EDYYSRAISADPSDGETISEYAKLQWQLHHD--------QEKALSLF 347
>Medtr3g463450.1 | TPR superfamily protein | HC |
chr3:25403273-25399680 | 20130731
Length = 513
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 160 TDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADL 219
T+L Y+T + P N L L+NYA++L V ++ +AEEY +AI P D E + YA
Sbjct: 399 TELVYQTGLSQEPNNALLLANYAQFLYIVAHEFDRAEEYFKRAIEVEPPDAEAYNKYATF 458
Query: 220 IWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
+W+ D AE Y +A+ A P + Y A+YAHFLW+ +D
Sbjct: 459 LWKVKNDLWAAEETYLEAISAEPSNTYYAANYAHFLWNTGGED 501
>Medtr5g082130.1 | hypothetical protein | HC |
chr5:35259864-35257495 | 20130731
Length = 416
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
D+ + TD YY+ I P N L LSNYA++L V D AEEY ++++ + E
Sbjct: 290 DQYEEYEKTDAYYKKHINLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVVVESPEAE 349
Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDDDVEQENSS 270
Y D + KD AE Y QA++A P + Y L+ YA FLW+ +QENS+
Sbjct: 350 AYCRYGDFLLWIRKDNWAAELRYLQALEADPGNTYYLSKYASFLWNT----GGQQENST 404