Miyakogusa Predicted Gene

Lj4g3v1880730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880730.1 tr|B9HAJ3|B9HAJ3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_819088 PE=4
SV=1,46.27,3e-19,seg,NULL,CUFF.49825.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114690.1 | TPR repeat protein | HC | chr4:47200290-472018...   163   9e-41
Medtr4g010250.1 | TPR repeat protein | HC | chr4:2308253-2305617...    64   9e-11
Medtr2g103795.1 | TPR repeat protein | HC | chr2:44688706-446946...    50   9e-07
Medtr2g103795.2 | TPR repeat protein | HC | chr2:44688706-446901...    50   1e-06

>Medtr4g114690.1 | TPR repeat protein | HC | chr4:47200290-47201853
           | 20130731
          Length = 292

 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 121/198 (61%), Gaps = 18/198 (9%)

Query: 1   MLLQSSSTPIMNSFLPH--SKDPSTEPEHLHRIPRTRSVTLSGSWS------PIEGRRSR 52
           MLL+SSSTP+MN ++PH  SKD S EPE LHRIP++RSVTLS S S      PI G  S+
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 53  MTRALSETDLTAAPKRKPPSHGLFDEDE--GKASTLAARSRTTSLGPALFSFSELEEGVS 110
           MTRALSETDL++   RKP     FDEDE   +  T  ARSRT S   AL S +E EE  S
Sbjct: 61  MTRALSETDLSSQLNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLTEFEESQS 120

Query: 111 GIGVRDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYRTMIEA 170
            +  RD G +   V                         F D NHG+DSTDLYYRTMIEA
Sbjct: 121 EVDARDGGSMLVLVEEGGGGGFDKNDGGVSR--------FGDSNHGNDSTDLYYRTMIEA 172

Query: 171 NPGNPLFLSNYARYLKEV 188
           NPGNPLFL NYA+YLKEV
Sbjct: 173 NPGNPLFLGNYAKYLKEV 190


>Medtr4g010250.1 | TPR repeat protein | HC | chr4:2308253-2305617 |
           20130731
          Length = 253

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 85/196 (43%), Gaps = 50/196 (25%)

Query: 1   MLLQSSSTPIMNSFLPH-SKDPSTEPEHLHRIPRTRSVTLSGSWSPIEGRRSRMTRALSE 59
           MLL+SSS PI++S LP+ SK+ S E EH  ++PRT S                +++ L++
Sbjct: 1   MLLRSSSAPILSSLLPYNSKESSLELEHTLKLPRTISFL-------------SLSQNLAK 47

Query: 60  TDL--TAAPKR---KPPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSELEEGVSGIGV 114
            DL  +++PK+    P S+ L      K     A+   TS              V G GV
Sbjct: 48  LDLQNSSSPKKPFLVPCSNVLSTNMNEKNKVKEAKMVQTS--------------VMGGGV 93

Query: 115 RDEGLLASRVLVEXXXXXXXXXXXXXXXXXXXXXXFWDKN-HGSDSTDLYYRTMIEANPG 173
           R  G                                W+ N HG D  D YY+ MIEA+P 
Sbjct: 94  RSNGGCKGGGRGSDGGNGRG----------------WNFNDHGRDRLDAYYQNMIEAHPC 137

Query: 174 NPLFLSNYARYLKEVC 189
           + L L NY ++LKEVC
Sbjct: 138 DALLLGNYGKFLKEVC 153


>Medtr2g103795.1 | TPR repeat protein | HC | chr2:44688706-44694656
           | 20130731
          Length = 275

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query: 158 DSTDLYYRTMIEANPGNPLFLSNYARYLKEV 188
           D TD YY+ MIEANP N L L NYA++LKEV
Sbjct: 137 DETDAYYQNMIEANPNNSLLLGNYAKFLKEV 167


>Medtr2g103795.2 | TPR repeat protein | HC | chr2:44688706-44690159
           | 20130731
          Length = 224

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query: 158 DSTDLYYRTMIEANPGNPLFLSNYARYLKEV 188
           D TD YY+ MIEANP N L L NYA++LKEV
Sbjct: 137 DETDAYYQNMIEANPNNSLLLGNYAKFLKEV 167